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RNPS1
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  • SUMMARY

  • TISSUE

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  • RNPS1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:83.7 nTPM
FANTOM5:6.8 Scaled Tags Per Million
Pig:84.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044014
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 83.7
Samples: 300

Max nTPM: 139.1
Min nTPM: 52.9
Std nTPM: 12.9
Median nTPM: 82.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 139.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 127.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 120.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 119.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 114.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 114.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 113.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 111.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 110.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 110.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 109.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 108.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 108.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 108.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 107.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 107.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 106.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 105.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 105.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 104.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 104.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 104.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 103.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 103.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 103.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 103.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 102.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 101.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 101.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 100.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 100.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 100.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 100.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 100.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 99.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 99.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 99.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 99.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 98.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 98.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 98.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 98.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 98.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 97.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 97.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 97.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 96.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 96.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 96.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 95.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 95.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 95.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 95.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 95.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 95.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 94.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 94.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 94.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 93.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 93.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 93.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 93.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 93.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 93.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 93.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 92.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 92.4
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 92.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 92.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 92.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 92.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 91.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 91.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 91.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 91.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 91.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 91.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 90.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 90.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 90.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 90.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 90.1
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 90.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 90.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 89.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 89.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 89.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 89.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 89.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 88.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 88.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 88.8
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 88.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 88.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 88.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 88.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 88.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 88.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 88.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 88.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 87.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 87.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 87.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 87.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 86.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 86.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 86.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 86.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 86.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 86.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 86.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 85.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 85.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 85.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 85.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 85.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 85.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 85.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 85.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 85.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 84.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 84.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 84.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 84.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 84.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 84.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 84.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 84.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 84.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 84.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 83.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 83.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 83.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 83.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 83.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 83.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 83.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 83.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 82.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 82.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 82.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 82.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 82.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 82.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 82.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 82.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 82.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 82.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 82.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 82.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 82.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 82.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 82.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 82.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 82.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 81.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 81.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 81.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 81.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 81.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 81.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 81.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 81.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 81.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 81.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 80.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 80.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 80.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 80.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 80.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 80.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 80.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 80.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 79.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 79.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 79.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 79.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 79.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 79.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 79.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 79.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 79.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 79.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 78.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 78.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 78.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 78.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 78.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 78.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 78.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 78.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 78.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 78.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 78.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 78.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 78.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 78.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 77.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 77.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 77.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 77.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 77.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 77.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 77.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 77.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 77.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 76.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 76.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 76.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 76.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 76.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 76.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 76.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 76.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 75.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 75.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 75.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 75.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 75.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 75.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 75.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 75.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 74.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 74.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 74.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 74.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 74.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 74.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 74.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 74.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 73.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 73.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 73.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 73.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 73.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 73.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 73.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 73.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 73.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 73.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 73.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 72.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 72.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 72.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 72.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 72.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 72.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 72.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 71.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 71.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 71.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 71.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 71.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 71.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 71.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 71.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 70.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 70.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 70.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 70.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 70.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 69.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 69.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 69.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 69.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 69.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 69.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 69.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 69.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 68.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 68.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 68.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 68.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 68.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 67.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 67.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 66.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 66.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 66.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 66.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 65.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 65.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 65.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 65.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 64.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 64.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 64.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 64.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 64.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 63.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 63.2
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 62.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 62.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 61.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 59.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 59.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 59.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 57.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 57.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 52.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.8
FF:10164-103B2 76 years, female 6.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.7
Pig sample Sample description nTPM
Caudate
nTPM: 84.7
Samples: 4

Max nTPM: 96.2
Min nTPM: 76.4
Sample A Female 76.7
Sample B Female 89.3
Sample C Male 96.2
Sample D Male 76.4

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