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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:277.3 nTPM
HPA Brain:11.1 nTPM
GTEx:277.3 nTPM
FANTOM5:154.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 9.5
1981 Female, age 72, midline 11.5
2565 Male, age 75, midline 10.8
2816 Male, age 47, midline 10.0
2194 Female, age 79, both hemispheres 8.0
2048 Male, age 55, midline 7.3
Cervical spinal cord, dorsal horn
nTPM: 11.1
2297 Male, age 75, both hemispheres 17.9
2069 Male, age 47, both hemispheres 13.5
2296 Male, age 66, both hemispheres 10.9
2721 Male, age 90, both hemispheres 9.7
2173 Female, age 72, unknown 7.8
1877 Male, age 55, unknown 6.7
Cervical spinal cord, ventral horn
nTPM: 10.6
2098 Female, age 72, unknown 16.9
2809 Male, age 90, both hemispheres 12.0
2295 Male, age 66, both hemispheres 11.6
2068 Male, age 55, unknown 8.4
2480 Male, age 75, both hemispheres 8.3
2820 Female, age 79, both hemispheres 6.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 277.3
Samples: 204

Max nTPM: 2021.5
Min nTPM: 112.9
Std nTPM: 156.6
Median nTPM: 248.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 2021.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 805.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 621.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 610.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 559.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 526.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 514.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 472.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 469.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 465.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 450.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 436.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 416.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 414.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 408.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 406.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 406.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 401.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 399.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 396.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 390.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 386.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 376.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 375.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 375.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 373.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 371.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 369.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 369.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 369.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 361.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 359.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 359.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 355.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 354.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 349.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 349.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 348.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 344.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 344.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 340.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 339.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 335.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 332.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 326.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 323.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 323.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 322.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 320.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 318.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 318.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 318.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 317.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 315.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 315.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 313.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 312.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 312.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 309.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 308.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 305.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 304.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 302.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 300.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 300.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 298.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 297.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 295.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 286.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 285.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 284.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 283.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 281.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 281.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 280.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 278.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 275.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 275.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 272.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 271.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 266.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 265.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 263.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 262.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 261.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 260.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 259.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 258.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 258.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 256.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 256.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 255.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 254.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 254.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 254.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 254.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 252.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 251.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 249.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 249.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 248.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 248.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 247.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 245.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 243.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 242.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 241.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 240.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 239.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 239.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 235.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 235.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 235.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 234.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 234.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 233.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 231.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 231.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 231.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 230.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 230.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 230.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 230.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 230.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 228.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 228.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 227.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 227.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 226.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 226.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 225.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 225.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 224.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 224.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 221.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 221.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 220.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 220.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 220.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 218.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 216.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 215.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 215.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 214.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 213.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 213.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 212.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 212.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 210.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 208.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 207.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 205.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 203.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 203.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 202.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 200.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 199.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 199.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 198.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 198.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 196.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 196.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 196.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 195.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 194.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 192.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 190.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 190.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 188.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 187.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 186.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 186.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 185.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 184.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 184.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 183.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 182.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 181.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 180.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 173.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 173.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 172.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 171.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 171.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 166.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 165.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 165.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 163.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 158.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 152.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 148.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 146.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 145.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 144.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 144.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 144.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 141.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 139.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 133.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 132.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 132.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 123.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 116.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 112.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

154.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 154.8
FF:10159-103A6 76 years, female 186.8
FF:10181-103D1 60 years, female 122.8

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