HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.6 nTPM
HPA Brain:116.7 nTPM
GTEx:105.6 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:50.8 nTPM
Mouse:106.4 nTPM
Allen mouse:14.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021256Antibody HPA021429
Glial cells MediumNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 116.7
Sample id Sample description nTPM
Hippocampus
nTPM: 111.8
2621 Female, age 67, right hemisphere 148.6
1898 Male, age 80, left hemisphere 116.7
2148 Female, age 91, left hemisphere 114.3
2529 Female, age 94, left hemisphere 102.7
1855 Male, age 76, left hemisphere 94.7
1911 Female, age 85, right hemisphere 94.2
Dentate gyrus
nTPM: 105.0
2530 Female, age 94, left hemisphere 130.6
2531 Female, age 67, both hemispheres 123.2
1927 Female, age 91, both hemispheres 109.6
2010 Male, age 76, both hemispheres 91.9
2246 Female, age 85, both hemispheres 88.3
2528 Male, age 74, both hemispheres 86.3
Entorhinal gyrus
nTPM: 104.6
2613 Female, age 94, left hemisphere 151.0
2686 Male, age 75, right hemisphere 109.8
2764 Male, age 80, right hemisphere 109.1
1787 Male, age 76, left hemisphere 96.0
1938 Female, age 85, left hemisphere 86.5
2117 Female, age 91, right hemisphere 75.0
Hippocampus, CA1
nTPM: 108.0
2749 Male, age 80, left hemisphere 157.5
2527 Male, age 74, both hemispheres 118.1
1873 Female, age 85, both hemispheres 92.7
2082 Female, age 91, right hemisphere 91.8
2045 Male, age 76, both hemispheres 79.8
Hippocampus, CA2
nTPM: 101.2
2437 Female, age 94, left hemisphere 131.1
1963 Male, age 80, left hemisphere 122.5
1892 Male, age 76, both hemispheres 103.5
2113 Female, age 91, right hemisphere 94.4
2249 Male, age 74, both hemispheres 81.3
1940 Female, age 85, left hemisphere 74.4
Hippocampus, CA3
nTPM: 116.7
2861 Female, age 67, both hemispheres 163.5
2620 Female, age 94, left hemisphere 155.9
2137 Male, age 80, left hemisphere 144.5
1867 Male, age 76, both hemispheres 84.6
2436 Male, age 74, both hemispheres 76.1
1891 Female, age 85, both hemispheres 75.7
Parahippocampal cortex
nTPM: 100.7
2245 Female, age 91, both hemispheres 137.2
2622 Female, age 67, right hemisphere 132.0
2693 Female, age 94, both hemispheres 109.1
1990 Female, age 91, right hemisphere 94.2
2692 Male, age 74, both hemispheres 94.2
2532 Female, age 72, left hemisphere 92.1
2250 Female, age 67, right hemisphere 90.7
1850 Male, age 80, both hemispheres 89.9
2018 Male, age 76, both hemispheres 84.4
1933 Female, age 85, both hemispheres 83.5
Perirhinal gyrus
nTPM: 99.0
2521 Female, age 94, right hemisphere 112.3
1794 Male, age 80, right hemisphere 106.9
1847 Female, age 91, left hemisphere 105.2
1841 Female, age 85, right hemisphere 89.6
2848 Male, age 76, right hemisphere 80.9
Subiculum
nTPM: 87.4
2619 Male, age 74, both hemispheres 106.2
1901 Male, age 80, both hemispheres 92.4
2438 Female, age 94, left hemisphere 92.3
1977 Female, age 85, both hemispheres 86.2
2729 Female, age 91, right hemisphere 77.5
2042 Male, age 76, both hemispheres 69.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 105.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 105.6
Samples: 255

Max nTPM: 349.4
Min nTPM: 11.8
Std nTPM: 51.6
Median nTPM: 99.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 349.4
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 324.5
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 275.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 261.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 250.4
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 234.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 234.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 215.0
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 206.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 200.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 199.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 94.6
FF:10169-103B7 60 years, female 119.4
FF:10153-102I9 76 years, female 69.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 50.8
Pig sample Sample description nTPM
Subiculum
nTPM: 42.2
Samples: 4

Max nTPM: 62.6
Min nTPM: 29.0
Sample A Female 62.6
Sample B Female 34.2
Sample C Male 43.0
Sample D Male 29.0
Dorsal hippocampus
nTPM: 34.6
Samples: 4

Max nTPM: 40.1
Min nTPM: 27.1
Sample A Female 40.1
Sample B Female 34.8
Sample C Male 36.3
Sample D Male 27.1
Entorhinal cortex
nTPM: 50.8
Samples: 4

Max nTPM: 57.0
Min nTPM: 45.3
Sample A Female 51.8
Sample B Female 45.3
Sample C Male 57.0
Sample D Male 49.1
Ventral hippocampus
nTPM: 37.9
Samples: 4

Max nTPM: 53.0
Min nTPM: 26.4
Sample A Female 36.6
Sample B Female 26.4
Sample C Male 53.0
Sample D Male 35.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 106.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 106.5
Samples: 4

Max nTPM: 113.6
Min nTPM: 96.9
Sample A Male 110.2
Sample B Male 105.1
Sample C Female 96.9
Sample D Female 113.6
Hippocampal formation
nTPM: 105.5
Samples: 4

Max nTPM: 108.9
Min nTPM: 100.4
Sample A Male 100.4
Sample B Male 107.1
Sample C Female 108.9
Sample D Female 105.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 14.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.5
68545794 Antisense, RP_050120_01_E05, Mouse strain C57BL/6J (56 days, male) 14.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo