MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48676.4 nTPM
HPA Brain:32973.0 nTPM
GTEx:48676.4 nTPM
Pig:32044.5 nTPM
Mouse:12915.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32973.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24067.7
2586 Male, age 75, left hemisphere 41399.8
2219 Male, age 76, both hemispheres 34436.3
2666 Male, age 74, left hemisphere 34179.2
1870 Female, age 42, unknown 26227.8
1833 Male, age 53, unknown 23349.6
2828 Female, age 72, unknown 21121.8
1830 Male, age 51, unknown 19394.0
1827 Male, age 72, unknown 13994.2
2019 Male, age 18, unknown 13795.8
2411 Female, age 72, unknown 12778.8
Dorsal raphe nucleus
nTPM: 14782.6
1828 Male, age 53, unknown 20908.7
2047 Male, age 72, unknown 18716.2
2750 Male, age 76, both hemispheres 15883.2
2016 Female, age 72, unknown 13435.0
2298 Female, age 72, unknown 4969.9
Inferior colliculus
nTPM: 22832.1
2849 Male, age 72, unknown 42735.0
1890 Male, age 53, unknown 22299.2
1848 Female, age 42, unknown 18675.1
2097 Female, age 72, unknown 7619.0
Median raphe nucleus
nTPM: 32973.0
2220 Male, age 76, midline 32973.0
Periaquaductal grey, anterior
nTPM: 13084.8
2502 Female, age 75, unknown 14819.3
1795 Male, age 51, unknown 13833.2
1947 Male, age 18, unknown 10602.0
Periaquaductal grey, dorsal
nTPM: 22691.8
2850 Male, age 76, both hemispheres 42849.5
2464 Female, age 72, unknown 17377.2
1840 Male, age 53, unknown 15418.0
1831 Male, age 72, unknown 15122.6
Periaquaductal grey, lateral
nTPM: 11628.0
2140 Male, age 76, both hemispheres 16314.8
2053 Male, age 18, unknown 12488.2
2272 Male, age 74, both hemispheres 6080.9
Pretectal area
nTPM: 17887.9
2667 Female, age 75, unknown 29684.7
1944 Female, age 72, unknown 24920.5
1817 Female, age 42, unknown 21941.6
1816 Male, age 51, unknown 21619.9
2007 Male, age 72, unknown 21346.5
1815 Male, age 53, unknown 20190.4
2825 Male, age 18, unknown 18506.5
2407 Male, age 75, both hemispheres 15000.4
2224 Female, age 72, unknown 9396.1
2316 Male, age 76, right hemisphere 8199.7
2273 Male, age 74, both hemispheres 5960.8
Red nucleus
nTPM: 22862.8
2503 Female, age 72, unknown 29433.5
1865 Male, age 51, unknown 29145.4
2588 Male, age 74, left hemisphere 28435.0
2584 Male, age 75, left hemisphere 28327.0
1954 Female, age 42, unknown 23592.4
2823 Male, age 76, right hemisphere 22905.4
2725 Female, age 75, unknown 21209.1
2785 Male, age 18, unknown 19832.7
2769 Male, age 72, unknown 19755.2
2227 Male, age 72, unknown 19385.0
1904 Male, age 53, unknown 19131.3
1821 Female, age 72, unknown 13201.8
Substantia nigra
nTPM: 24586.6
2699 Male, age 18, unknown 55435.9
2665 Male, age 74, both hemispheres 42221.2
1916 Female, age 42, unknown 30598.9
1941 Male, age 53, unknown 20802.3
1889 Female, age 72, unknown 19621.7
2583 Male, age 75, right hemisphere 18840.0
2241 Male, age 72, unknown 16343.9
2409 Female, age 72, unknown 15324.3
1851 Male, age 51, unknown 14778.6
2590 Female, age 75, unknown 11899.0
Superior colliculus
nTPM: 17844.0
2664 Male, age 75, both hemispheres 32756.8
2587 Male, age 74, left hemisphere 21026.2
2087 Female, age 72, unknown 19631.9
1913 Female, age 42, unknown 17762.3
1895 Male, age 76, right hemisphere 15779.6
2668 Female, age 75, unknown 15685.2
1839 Male, age 51, unknown 15482.9
1995 Male, age 72, unknown 15384.4
1796 Male, age 53, unknown 13718.3
2261 Male, age 18, unknown 11212.5
Ventral tegmental area
nTPM: 19166.8
2218 Male, age 76, both hemispheres 28821.1
2223 Female, age 72, unknown 22105.4
1942 Male, age 51, unknown 18627.7
1915 Female, age 42, unknown 15941.2
2021 Male, age 53, unknown 15654.3
2410 Female, age 72, unknown 13851.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48676.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48676.4
Samples: 183

Max nTPM: 208507.4
Min nTPM: 2170.9
Std nTPM: 35882.2
Median nTPM: 38163.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 208507.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 199770.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 165781.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 149268.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 147155.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 130589.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 130497.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 129974.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 128251.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 123244.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 122368.3
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32044.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26141.5
Samples: 4

Max nTPM: 30954.6
Min nTPM: 19189.8
Sample A Female 30954.6
Sample B Female 24972.6
Sample C Male 29448.8
Sample D Male 19189.8
Midbrain
nTPM: 32044.5
Samples: 4

Max nTPM: 42907.6
Min nTPM: 24480.2
Sample A Female 24480.2
Sample B Female 42907.6
Sample C Male 33715.4
Sample D Male 27074.7
Periaqueductal gray
nTPM: 22474.5
Samples: 3

Max nTPM: 24407.7
Min nTPM: 20546.4
Sample B Female 24407.7
Sample C Male 22469.5
Sample D Male 20546.4
Superior colliculi
nTPM: 26769.5
Samples: 4

Max nTPM: 34645.4
Min nTPM: 11038.6
Sample A Female 28214.7
Sample B Female 11038.6
Sample C Male 34645.4
Sample D Male 33179.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12915.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 12915.6
Samples: 4

Max nTPM: 14449.2
Min nTPM: 12168.1
Sample A Male 14449.2
Sample B Male 12594.0
Sample C Female 12168.1
Sample D Female 12450.9

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