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  • GSTM2
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:107.6 nTPM
HPA Brain:45.8 nTPM
GTEx:107.6 nTPM
FANTOM5:176.0 Scaled Tags Per Million
Mouse:22.2 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.8
Sample id Sample description nTPM
Amygdala
nTPM: 45.8
2514 Male, age 75, right hemisphere 52.7
2695 Female, age 67, right hemisphere 50.3
1987 Female, age 91, left hemisphere 49.6
2517 Female, age 94, left hemisphere 43.6
2814 Male, age 76, right hemisphere 32.8
Basal amygdala
nTPM: 41.8
2609 Male, age 75, right hemisphere 65.9
2243 Female, age 91, right hemisphere 44.5
2110 Male, age 80, left hemisphere 39.9
2685 Female, age 94, left hemisphere 36.5
1955 Male, age 76, both hemispheres 35.3
2827 Female, age 67, right hemisphere 28.7
Central amygdala
nTPM: 44.7
2515 Male, age 75, right hemisphere 54.1
2701 Female, age 91, right hemisphere 50.9
2239 Male, age 80, left hemisphere 44.5
2826 Female, age 94, left hemisphere 40.6
1905 Male, age 76, both hemispheres 33.6
Corticomedial amygdala
nTPM: 41.0
2428 Male, age 75, right hemisphere 54.9
2242 Female, age 91, right hemisphere 43.4
2829 Male, age 80, left hemisphere 43.1
2429 Female, age 94, left hemisphere 40.5
2240 Male, age 76, both hemispheres 32.9
2535 Female, age 67, right hemisphere 31.1
Lateral amygdala
nTPM: 40.5
2516 Male, age 75, right hemisphere 52.7
2255 Female, age 91, right hemisphere 51.3
2256 Male, age 80, left hemisphere 49.5
2534 Female, age 94, left hemisphere 34.3
1883 Male, age 76, both hemispheres 31.5
2830 Female, age 67, right hemisphere 23.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 107.6
Samples: 181

Max nTPM: 269.8
Min nTPM: 24.3
Std nTPM: 35.8
Median nTPM: 102.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 269.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 223.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 218.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 215.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 204.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 202.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 196.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 181.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 177.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 167.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 167.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 162.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 160.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 156.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 155.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 154.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 150.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 147.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 144.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 144.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 143.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 142.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 142.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 142.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 140.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 137.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 137.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 136.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 136.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 136.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 135.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 135.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 135.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 134.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 133.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 132.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 131.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 129.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 129.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 128.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 128.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 126.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 126.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 126.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 125.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 125.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 125.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 124.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 123.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 123.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 121.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 121.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 121.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 121.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 121.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 120.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 120.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 116.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 116.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 116.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 116.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 115.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 114.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 114.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 114.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 112.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 112.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 112.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 111.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 110.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 110.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 109.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 107.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 106.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 106.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 106.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 105.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 105.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 104.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 104.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 104.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 103.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 103.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 103.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 102.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 102.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 102.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 102.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 102.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 101.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 100.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 99.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 98.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 98.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 98.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 98.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 97.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 97.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 97.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 96.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 96.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 96.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 94.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 94.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 94.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 93.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 93.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 93.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 93.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 92.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 92.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 92.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 92.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 92.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 91.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 91.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 91.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 91.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 90.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 90.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 89.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 89.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 89.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 89.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 89.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 88.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 88.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 87.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 87.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 86.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 86.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 85.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 83.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 81.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 80.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 80.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 79.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 79.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 78.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 77.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 76.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 75.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 75.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 75.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 75.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 74.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 74.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 74.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 73.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 71.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 70.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 68.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 68.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 67.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 66.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 66.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 64.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 64.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 63.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 61.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 60.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 60.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 59.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 58.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 56.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 56.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 56.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 44.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 44.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 43.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 24.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

176.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 176.0
FF:10151-102I7 76 years, female 176.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 22.2
Samples: 4

Max nTPM: 24.8
Min nTPM: 20.0
Sample A Male 23.0
Sample B Male 20.0
Sample C Female 24.8
Sample D Female 20.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.3
71656927 Antisense, RP_050927_04_E09, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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