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ARL2
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ARL2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:235.9 nTPM
FANTOM5:183.3 Scaled Tags Per Million
Pig:130.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044610
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 235.9
Samples: 300

Max nTPM: 558.4
Min nTPM: 79.0
Std nTPM: 79.5
Median nTPM: 224.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 558.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 528.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 507.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 486.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 467.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 464.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 432.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 425.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 419.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 412.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 411.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 406.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 385.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 385.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 383.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 381.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 371.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 370.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 370.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 368.8
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 366.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 360.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 359.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 357.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 353.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 347.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 345.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 339.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 338.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 331.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 327.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 326.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 324.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 324.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 318.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 317.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 315.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 314.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 313.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 312.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 312.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 310.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 309.9
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 308.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 308.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 306.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 305.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 302.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 301.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 300.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 300.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 299.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 299.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 298.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 298.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 297.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 296.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 296.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 296.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 296.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 295.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 294.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 293.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 293.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 292.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 291.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 291.2
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 290.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 287.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 285.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 284.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 284.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 283.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 281.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 281.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 280.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 280.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 279.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 279.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 279.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 279.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 279.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 276.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 276.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 275.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 274.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 273.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 273.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 272.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 271.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 270.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 269.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 269.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 267.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 267.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 265.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 264.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 264.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 263.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 263.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 262.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 261.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 260.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 260.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 257.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 257.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 256.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 256.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 255.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 254.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 253.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 253.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 253.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 252.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 251.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 250.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 250.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 250.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 250.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 248.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 247.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 247.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 247.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 246.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 245.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 243.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 243.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 243.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 242.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 242.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 242.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 241.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 238.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 238.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 236.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 235.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 235.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 235.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 234.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 233.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 232.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 232.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 231.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 231.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 230.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 228.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 225.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 225.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 225.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 224.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 223.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 223.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 223.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 222.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 221.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 221.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 221.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 221.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 220.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 219.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 219.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 218.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 215.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 215.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 214.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 214.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 213.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 213.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 212.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 210.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 210.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 209.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 209.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 209.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 209.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 206.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 205.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 205.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 205.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 205.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 205.0
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 204.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 204.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 203.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 203.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 203.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 202.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 201.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 201.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 198.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 197.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 197.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 196.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 196.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 194.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 194.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 193.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 193.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 193.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 193.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 193.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 192.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 191.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 191.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 191.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 190.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 188.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 188.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 187.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 186.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 185.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 184.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 184.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 182.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 182.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 182.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 181.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 181.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 181.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 181.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 180.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 179.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 179.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 178.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 178.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 178.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 176.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 176.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 175.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 175.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 174.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 174.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 173.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 173.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 172.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 171.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 171.1
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 170.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 170.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 168.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 166.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 166.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 166.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 165.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 165.8
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 164.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 163.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 162.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 161.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 160.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 159.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 158.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 157.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 155.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 154.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 154.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 154.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 153.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 153.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 152.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 152.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 152.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 150.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 150.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 149.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 149.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 149.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 149.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 147.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 146.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 146.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 145.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 144.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 143.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 142.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 140.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 140.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 139.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 139.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 139.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 138.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 138.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 136.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 133.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 132.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 131.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 131.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 131.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 130.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 128.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 128.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 127.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 127.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 112.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 109.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 102.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 84.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 83.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 80.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 79.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

183.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 183.3
FF:10164-103B2 76 years, female 183.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.5
Pig sample Sample description nTPM
Caudate
nTPM: 130.5
Samples: 4

Max nTPM: 157.6
Min nTPM: 104.8
Sample A Female 104.8
Sample B Female 148.6
Sample C Male 157.6
Sample D Male 111.0

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