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  • TMX2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:75.1 nTPM
HPA Brain:78.8 nTPM
GTEx:75.1 nTPM
FANTOM5:118.2 Scaled Tags Per Million
Pig:90.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 66.5
1981 Female, age 72, midline 78.9
2565 Male, age 75, midline 70.1
2048 Male, age 55, midline 69.5
2194 Female, age 79, both hemispheres 57.1
2816 Male, age 47, midline 56.5
Cervical spinal cord, dorsal horn
nTPM: 78.8
2296 Male, age 66, both hemispheres 94.0
2069 Male, age 47, both hemispheres 88.0
2173 Female, age 72, unknown 85.8
2297 Male, age 75, both hemispheres 77.7
1877 Male, age 55, unknown 67.8
2721 Male, age 90, both hemispheres 59.6
Cervical spinal cord, ventral horn
nTPM: 66.3
2098 Female, age 72, unknown 78.8
2480 Male, age 75, both hemispheres 71.8
2809 Male, age 90, both hemispheres 68.4
2068 Male, age 55, unknown 63.2
2295 Male, age 66, both hemispheres 60.1
2820 Female, age 79, both hemispheres 55.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 75.1
Samples: 204

Max nTPM: 111.2
Min nTPM: 34.9
Std nTPM: 14.3
Median nTPM: 75.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 111.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 110.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 110.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 105.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 103.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 101.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 101.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 100.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 100.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 100.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 99.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 99.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 98.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 98.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 96.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 96.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 95.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 95.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 93.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 92.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 92.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 91.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 91.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 91.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 91.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 90.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 89.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 89.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 88.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 88.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 88.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 88.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 88.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 87.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 86.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 86.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 86.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 86.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 86.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 86.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 86.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 86.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 86.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 86.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 85.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 85.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 85.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 85.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 85.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 85.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 84.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 84.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 84.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 84.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 84.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 84.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 84.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 84.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 83.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 83.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 83.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 82.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 82.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 82.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 81.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 81.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 81.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 81.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 81.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 81.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 80.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 80.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 80.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 80.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 80.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 79.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 79.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 79.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 79.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 78.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 78.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 78.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 78.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 78.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 78.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 78.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 77.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 77.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 77.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 77.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 77.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 77.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 77.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 76.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 76.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 76.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 76.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 76.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 76.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 76.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 75.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 75.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 75.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 75.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 75.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 75.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 75.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 74.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 74.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 74.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 74.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 74.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 73.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 73.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 73.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 73.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 73.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 73.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 73.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 73.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 72.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 72.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 72.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 72.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 72.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 71.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 71.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 71.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 71.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 70.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 70.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 70.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 70.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 70.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 69.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 69.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 69.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 69.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 68.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 68.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 68.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 68.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 68.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 68.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 67.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 67.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 67.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 66.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 66.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 66.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 66.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 66.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 66.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 65.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 65.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 65.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 64.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 64.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 64.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 63.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 63.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 63.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 63.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 63.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 62.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 62.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 62.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 62.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 62.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 62.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 61.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 61.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 60.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 60.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 60.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 59.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 59.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 57.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 57.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 57.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 56.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 56.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 56.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 56.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 56.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 55.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 54.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 54.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 54.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 54.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 53.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 53.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 50.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 50.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 50.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 48.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 46.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 42.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 40.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 40.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 38.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 37.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 34.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 118.2
FF:10181-103D1 60 years, female 137.1
FF:10159-103A6 76 years, female 99.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.0
Samples: 4

Max nTPM: 96.4
Min nTPM: 63.5
Sample A Female 96.4
Sample B Female 63.5
Sample C Male 63.9
Sample D Male 84.3
Ventral spinal cord
nTPM: 90.5
Samples: 4

Max nTPM: 99.7
Min nTPM: 73.9
Sample A Female 99.7
Sample B Female 93.1
Sample C Male 95.2
Sample D Male 73.9

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