MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.4 nTPM
HPA Brain:138.2 nTPM
GTEx:57.4 nTPM
FANTOM5:195.8 Scaled Tags Per Million
Pig:207.6 nTPM
Mouse:118.4 nTPM
Allen mouse:2.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 138.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.4
1870 Female, age 42, unknown 131.1
2411 Female, age 72, unknown 129.4
2019 Male, age 18, unknown 128.2
2586 Male, age 75, left hemisphere 128.2
1827 Male, age 72, unknown 124.3
1833 Male, age 53, unknown 112.4
1830 Male, age 51, unknown 109.7
2666 Male, age 74, left hemisphere 108.8
2828 Female, age 72, unknown 105.7
2219 Male, age 76, both hemispheres 86.1
Dorsal raphe nucleus
nTPM: 138.2
2298 Female, age 72, unknown 170.5
2016 Female, age 72, unknown 143.1
1828 Male, age 53, unknown 128.4
2750 Male, age 76, both hemispheres 126.3
2047 Male, age 72, unknown 122.5
Inferior colliculus
nTPM: 121.0
2097 Female, age 72, unknown 143.8
1890 Male, age 53, unknown 124.3
1848 Female, age 42, unknown 111.0
2849 Male, age 72, unknown 104.8
Median raphe nucleus
nTPM: 125.3
2220 Male, age 76, midline 125.3
Periaquaductal grey, anterior
nTPM: 117.1
2502 Female, age 75, unknown 123.1
1795 Male, age 51, unknown 115.5
1947 Male, age 18, unknown 112.6
Periaquaductal grey, dorsal
nTPM: 129.3
2850 Male, age 76, both hemispheres 155.3
1840 Male, age 53, unknown 132.2
2464 Female, age 72, unknown 118.7
1831 Male, age 72, unknown 111.1
Periaquaductal grey, lateral
nTPM: 127.1
2140 Male, age 76, both hemispheres 134.3
2272 Male, age 74, both hemispheres 130.1
2053 Male, age 18, unknown 116.9
Pretectal area
nTPM: 130.6
2007 Male, age 72, unknown 155.8
1816 Male, age 51, unknown 150.0
2224 Female, age 72, unknown 143.5
1815 Male, age 53, unknown 141.5
2273 Male, age 74, both hemispheres 139.7
1944 Female, age 72, unknown 136.6
1817 Female, age 42, unknown 135.4
2316 Male, age 76, right hemisphere 121.4
2825 Male, age 18, unknown 115.1
2667 Female, age 75, unknown 110.7
2407 Male, age 75, both hemispheres 87.3
Red nucleus
nTPM: 125.3
1821 Female, age 72, unknown 148.4
2503 Female, age 72, unknown 140.4
2725 Female, age 75, unknown 140.4
2785 Male, age 18, unknown 129.8
1954 Female, age 42, unknown 125.8
1904 Male, age 53, unknown 125.1
2227 Male, age 72, unknown 120.7
2823 Male, age 76, right hemisphere 120.3
1865 Male, age 51, unknown 119.8
2769 Male, age 72, unknown 119.3
2588 Male, age 74, left hemisphere 116.7
2584 Male, age 75, left hemisphere 96.5
Substantia nigra
nTPM: 136.4
2241 Male, age 72, unknown 155.3
1851 Male, age 51, unknown 145.7
1916 Female, age 42, unknown 144.1
2665 Male, age 74, both hemispheres 142.5
1889 Female, age 72, unknown 140.1
2590 Female, age 75, unknown 134.0
2409 Female, age 72, unknown 133.9
1941 Male, age 53, unknown 127.7
2699 Male, age 18, unknown 126.4
2583 Male, age 75, right hemisphere 114.0
Superior colliculus
nTPM: 121.5
2261 Male, age 18, unknown 142.1
1913 Female, age 42, unknown 135.5
1995 Male, age 72, unknown 129.7
1796 Male, age 53, unknown 126.0
2087 Female, age 72, unknown 124.8
2668 Female, age 75, unknown 120.5
2587 Male, age 74, left hemisphere 120.3
1839 Male, age 51, unknown 111.5
2664 Male, age 75, both hemispheres 103.3
1895 Male, age 76, right hemisphere 101.0
Ventral tegmental area
nTPM: 126.4
1915 Female, age 42, unknown 131.7
2223 Female, age 72, unknown 131.2
2410 Female, age 72, unknown 127.0
2218 Male, age 76, both hemispheres 126.0
1942 Male, age 51, unknown 122.0
2021 Male, age 53, unknown 120.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.4
Samples: 183

Max nTPM: 115.1
Min nTPM: 31.9
Std nTPM: 13.6
Median nTPM: 55.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 115.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 104.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 100.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 92.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 86.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 85.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 84.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 83.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 81.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 81.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 80.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 195.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 195.8
FF:10158-103A5 76 years, female 195.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 207.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 191.2
Samples: 4

Max nTPM: 218.7
Min nTPM: 158.1
Sample A Female 218.7
Sample B Female 188.9
Sample C Male 199.0
Sample D Male 158.1
Midbrain
nTPM: 207.6
Samples: 4

Max nTPM: 233.5
Min nTPM: 187.4
Sample A Female 204.6
Sample B Female 205.0
Sample C Male 233.5
Sample D Male 187.4
Periaqueductal gray
nTPM: 176.4
Samples: 3

Max nTPM: 185.4
Min nTPM: 161.9
Sample B Female 182.0
Sample C Male 185.4
Sample D Male 161.9
Superior colliculi
nTPM: 201.8
Samples: 4

Max nTPM: 225.7
Min nTPM: 169.8
Sample A Female 217.7
Sample B Female 169.8
Sample C Male 225.7
Sample D Male 193.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 118.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.4
Samples: 4

Max nTPM: 122.4
Min nTPM: 113.3
Sample A Male 113.3
Sample B Male 122.4
Sample C Female 121.7
Sample D Female 116.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69817205 Antisense, RP_050510_02_H04, Mouse strain C57BL/6J (56 days, male) 2.1

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