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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Medium
Cells in tubules: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:291.4 nTPM
HPA:100.4 nTPM
GTEx:291.4 nTPM
FANTOM5:379.7 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB020825Antibody CAB040557
Cells in glomeruli MediumLow
Cells in tubules HighHigh




KIDNEY - TISSUE (MS)i

The MS-based protein data details section shows detailed information about the individual samples used for the relative protein abundance measurements.

Intensity values provides a relative protein abundance comparable between different genes and samples. All samples comes from one female donor. Median detection value represents the tissue for specificity and distribution categories. Protein detection is defined as a non-missing intensity value, and protein values are set to missing for a tissue if more than half of its replicates lacked a measurement for that protein.

Read more
Median intensity 124349425
Replicate Intensity
Kidney_01
124349425
Kidney_02
127122272
Kidney_03
118227689

KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.4
overview
Female, age 58
Kidney sample 55
nTPM: 120.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 124.1
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 96.4
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 133.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 47.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 79.6
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 174.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 86.3
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 41.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

291.4
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 291.4
Samples: 104

Max nTPM: 660.4
Min nTPM: 128.8
Std nTPM: 95.9
Median nTPM: 268.7
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 660.4
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 559.4
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 526.4
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 505.4
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 496.9
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 476.9
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 466.5
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 456.8
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 450.6
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 448.1
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 436.5
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 435.7
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 421.5
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 404.4
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 399.8
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 398.7
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 378.4
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 374.6
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 362.4
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 353.5
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 347.0
GTEX-14C39-2126-SM-664OH 40-49 years, male 344.7
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 340.6
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 338.4
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 337.5
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 334.4
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 331.2
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 330.5
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 327.7
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 327.4
GTEX-O5YV-1226-SM-EV795 60-69 years, female 325.8
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 324.7
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 322.8
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 312.9
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 310.5
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 307.5
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 305.9
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 302.2
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 300.1
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 293.9
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 292.2
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 290.7
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 288.7
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 280.8
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 277.7
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 277.2
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 277.1
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 276.7
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 276.4
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 273.1
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 272.3
GTEX-12696-0926-SM-5FQTV 60-69 years, male 270.3
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 267.1
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 264.6
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 264.0
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 262.1
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 261.1
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 261.0
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 259.7
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 256.7
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 255.4
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 253.5
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 250.6
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 248.2
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 246.8
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 246.1
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 245.6
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 241.3
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 241.0
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 238.7
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 238.4
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 236.0
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 235.4
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 234.7
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 233.8
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 233.3
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 232.0
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 228.1
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 222.6
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 222.2
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 218.8
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 217.5
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 216.4
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 214.3
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 213.0
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 211.2
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 210.3
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 208.5
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 205.8
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 203.0
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 200.1
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 195.7
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 194.7
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 192.3
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 190.0
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 185.7
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 182.7
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 180.9
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 179.1
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 177.6
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 175.8
GTEX-13112-2126-SM-5GCO4 50-59 years, male 145.8
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 142.2
GTEX-RN64-1626-SM-48FD7 50-59 years, male 128.8
Show allShow less
Kidney - Medulla
Average nTPM: 280.0
Samples: 11

Max nTPM: 468.8
Min nTPM: 128.0
Std nTPM: 121.2
Median nTPM: 253.6
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 468.8
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 442.3
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 405.6
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 387.0
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 309.8
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 253.6
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 177.9
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 177.4
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 174.4
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 155.1
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 128.0
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

379.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 379.7
FF:10017-101C8 60,62,63 years, female 379.7

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