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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
287.0
nTPM
Monaco:
1945.5
nTPM
Schmiedel:
50.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
287.0
HPA sample
nTPM
gdT-cell nTPM: 287.1
Samples: 6
Max nTPM: 332.2
Min nTPM: 228.3
P10809_1007
307.1
P10809_1022
307.2
P10809_1041
291.9
P10809_1060
228.3
P10809_1077
255.7
P10809_1098
332.2
MAIT T-cell nTPM: 111.3
Samples: 6
Max nTPM: 153.6
Min nTPM: 51.1
P10809_1006
153.6
P10809_1024
113.3
P10809_1043
121.6
P10809_1062
51.1
P10809_1083
109.7
P10809_1097
118.2
Memory CD4 T-cell nTPM: 1.7
Samples: 6
Max nTPM: 4.7
Min nTPM: 0.5
P10809_1014
0.9
P10809_1026
1.5
P10809_1045
4.7
P10809_1064
0.5
P10809_1086
1.6
P10809_1113
1.2
Memory CD8 T-cell nTPM: 260.3
Samples: 5
Max nTPM: 326.7
Min nTPM: 145.6
P10809_1012
326.7
P10809_1027
258.6
P10809_1046
275.1
P10809_1065
145.6
P10809_1111
295.7
Naive CD4 T-cell nTPM: 2.3
Samples: 6
Max nTPM: 5.3
Min nTPM: 0.1
P10809_1015
1.2
P10809_1030
0.1
P10809_1049
4.9
P10809_1068
0.7
P10809_1085
5.3
P10809_1112
1.4
Naive CD8 T-cell nTPM: 258.6
Samples: 6
Max nTPM: 369.2
Min nTPM: 136.0
P10809_1016
269.2
P10809_1031
249.0
P10809_1050
267.2
P10809_1069
136.0
P10809_1087
369.2
P10809_1110
261.0
T-reg nTPM: 0.7
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.0
P10809_1018
0.0
P10809_1037
0.4
P10809_1056
3.2
P10809_1075
0.2
P10809_1094
0.2
P10809_1106
0.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1945.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 1568.8
Samples: 4
Max nTPM: 1835.2
Min nTPM: 1366.3
RHH5202_R3573
1835.2
RHH5230_R3602
1366.3
RHH5259_R3631
1388.2
RHH5288_R3660
1685.3
Effector memory CD8 T-cell nTPM: 1861.6
Samples: 4
Max nTPM: 2032.7
Min nTPM: 1721.2
RHH5203_R3574
1872.6
RHH5231_R3603
1819.7
RHH5260_R3632
1721.2
RHH5289_R3661
2032.7
MAIT T-cell nTPM: 608.8
Samples: 4
Max nTPM: 676.9
Min nTPM: 567.4
RHH5233_R3605
567.4
RHH5205_R3576
616.4
RHH5262_R3634
574.4
RHH5297_R3663
676.9
Memory CD4 T-cell TFH nTPM: 21.9
Samples: 4
Max nTPM: 31.0
Min nTPM: 15.9
RHH5300_R3666
20.3
RHH5236_R3608
20.4
RHH5265_R3637
15.9
RHH5208_R3579
31.0
Memory CD4 T-cell Th1 nTPM: 58.4
Samples: 4
Max nTPM: 67.5
Min nTPM: 47.6
RHH5210_R3581
67.5
RHH5302_R3668
52.3
RHH5238_R3610
47.6
RHH5267_R3639
66.1
Memory CD4 T-cell Th1/Th17 nTPM: 30.6
Samples: 4
Max nTPM: 41.4
Min nTPM: 24.0
RHH5303_R3669
30.8
RHH5211_R3582
41.4
RHH5239_R3611
26.2
RHH5268_R3640
24.0
Memory CD4 T-cell Th17 nTPM: 33.2
Samples: 4
Max nTPM: 46.5
Min nTPM: 24.4
RHH5304_R3670
29.7
RHH5212_R3583
46.5
RHH5240_R3612
32.1
RHH5269_R3641
24.4
Memory CD4 T-cell Th2 nTPM: 34.9
Samples: 4
Max nTPM: 54.7
Min nTPM: 17.8
RHH5305_R3671
39.5
RHH5213_R3584
54.7
RHH5241_R3613
17.8
RHH5270_R3642
27.7
Naive CD4 T-cell nTPM: 44.8
Samples: 4
Max nTPM: 53.0
Min nTPM: 37.1
RHH5306_R3672
44.3
RHH5214_R3585
53.0
RHH5242_R3614
44.7
RHH5271_R3643
37.1
Naive CD8 T-cell nTPM: 1539.9
Samples: 4
Max nTPM: 1870.8
Min nTPM: 1177.9
RHH5201_R3572
1870.8
RHH5229_R3601
1177.9
RHH5258_R3630
1507.6
RHH5287_R3659
1603.4
Non-Vd2 gdTCR nTPM: 1732.1
Samples: 4
Max nTPM: 2019.2
Min nTPM: 1451.7
RHH5235_R3607
1717.9
RHH5264_R3636
2019.2
RHH5207_R3578
1451.7
RHH5299_R3665
1739.5
T-reg nTPM: 33.7
Samples: 4
Max nTPM: 50.5
Min nTPM: 21.5
RHH5301_R3667
36.3
RHH5237_R3609
21.5
RHH5266_R3638
26.4
RHH5209_R3580
50.5
Terminal effector memory CD4 T-cell nTPM: 492.1
Samples: 2
Max nTPM: 860.0
Min nTPM: 124.1
RHH5243_R3615
860.0
RHH5272_R3644
124.1
Terminal effector memory CD8 T-cell nTPM: 1945.5
Samples: 4
Max nTPM: 2097.3
Min nTPM: 1785.3
RHH5232_R3604
1959.7
RHH5204_R3575
1785.3
RHH5261_R3633
2097.3
RHH5296_R3662
1939.5
Vd2 gdTCR nTPM: 1685.6
Samples: 4
Max nTPM: 1919.6
Min nTPM: 1572.6
RHH5234_R3606
1639.3
RHH5206_R3577
1919.6
RHH5263_R3635
1572.6
RHH5298_R3664
1610.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
