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  • FIS1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:428.1 nTPM
HPA Brain:152.3 nTPM
GTEx:428.1 nTPM
FANTOM5:147.7 Scaled Tags Per Million
Pig:320.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 132.0
1981 Female, age 72, midline 175.0
2565 Male, age 75, midline 134.8
2816 Male, age 47, midline 122.8
2194 Female, age 79, both hemispheres 115.6
2048 Male, age 55, midline 111.8
Cervical spinal cord, dorsal horn
nTPM: 146.1
2296 Male, age 66, both hemispheres 216.4
2173 Female, age 72, unknown 188.5
2069 Male, age 47, both hemispheres 162.4
1877 Male, age 55, unknown 130.1
2297 Male, age 75, both hemispheres 90.3
2721 Male, age 90, both hemispheres 89.0
Cervical spinal cord, ventral horn
nTPM: 152.3
2098 Female, age 72, unknown 179.3
2480 Male, age 75, both hemispheres 177.4
2809 Male, age 90, both hemispheres 157.7
2068 Male, age 55, unknown 154.7
2295 Male, age 66, both hemispheres 133.9
2820 Female, age 79, both hemispheres 111.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

428.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 428.1
Samples: 204

Max nTPM: 767.7
Min nTPM: 154.5
Std nTPM: 122.0
Median nTPM: 434.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 767.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 759.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 701.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 699.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 692.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 686.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 681.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 670.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 656.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 652.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 631.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 619.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 617.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 617.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 615.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 610.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 607.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 597.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 588.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 583.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 578.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 577.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 574.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 565.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 561.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 557.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 555.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 552.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 544.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 542.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 542.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 541.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 538.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 537.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 536.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 534.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 531.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 528.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 528.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 528.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 526.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 526.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 521.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 520.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 519.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 519.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 514.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 511.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 508.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 505.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 503.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 503.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 502.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 497.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 497.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 495.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 495.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 492.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 491.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 491.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 490.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 481.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 481.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 479.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 479.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 476.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 475.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 473.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 473.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 473.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 472.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 472.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 471.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 470.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 470.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 467.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 465.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 465.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 464.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 462.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 460.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 459.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 454.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 454.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 453.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 453.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 452.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 450.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 450.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 448.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 447.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 447.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 447.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 446.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 445.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 443.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 442.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 439.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 436.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 436.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 435.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 435.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 434.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 433.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 432.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 430.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 428.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 428.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 424.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 423.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 421.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 418.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 417.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 417.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 416.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 414.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 412.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 412.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 411.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 406.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 404.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 404.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 404.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 401.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 399.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 399.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 398.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 397.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 396.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 393.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 392.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 392.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 388.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 382.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 381.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 380.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 379.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 378.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 371.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 369.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 368.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 366.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 362.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 361.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 357.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 354.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 354.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 353.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 352.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 351.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 351.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 348.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 347.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 345.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 345.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 343.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 341.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 340.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 338.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 337.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 336.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 335.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 331.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 330.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 328.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 327.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 318.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 316.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 311.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 306.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 302.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 302.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 295.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 285.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 281.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 279.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 278.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 272.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 271.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 266.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 264.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 262.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 259.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 258.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 257.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 257.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 248.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 247.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 247.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 244.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 222.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 221.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 221.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 219.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 218.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 216.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 213.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 211.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 206.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 205.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 180.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 166.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 159.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 154.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

147.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 147.7
FF:10181-103D1 60 years, female 186.6
FF:10159-103A6 76 years, female 108.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 285.6
Samples: 4

Max nTPM: 324.2
Min nTPM: 256.1
Sample A Female 256.1
Sample B Female 285.7
Sample C Male 324.2
Sample D Male 276.5
Ventral spinal cord
nTPM: 320.0
Samples: 4

Max nTPM: 353.3
Min nTPM: 273.0
Sample A Female 273.0
Sample B Female 325.1
Sample C Male 328.5
Sample D Male 353.3

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