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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:133.3 nTPM
HPA:120.1 nTPM
GTEx:133.3 nTPM
FANTOM5:214.5 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA039874Antibody CAB014889Antibody CAB026335
Endocrine cells High--
Enterocytes High--
Enterocytes - Microvilli Not detected--
Glandular cells -HighHigh
Goblet cells High--
Paneth cells High--






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.1
overview
Male, age 65
Small intestine sample 232
nTPM: 147.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 111.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 106.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 114.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 133.3
Samples: 207

Max nTPM: 199.7
Min nTPM: 86.2
Std nTPM: 23.5
Median nTPM: 131.4
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 199.7
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 196.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 196.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 194.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 192.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 190.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 183.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 182.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 181.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 178.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 177.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 177.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 175.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 175.2
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 172.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 171.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 169.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 169.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 168.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 168.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 163.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 163.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 163.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 163.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 163.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 163.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 161.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 161.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 161.2
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 161.0
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 160.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 159.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 158.9
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 158.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 157.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 157.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 156.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 155.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 155.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 155.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 152.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 151.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 150.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 150.9
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 150.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 150.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 150.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 150.2
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 150.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 149.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 148.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 148.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 148.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 148.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 146.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 146.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 146.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 146.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 145.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 144.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 143.3
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 142.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 141.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 141.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 140.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 140.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 140.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 140.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 140.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 140.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 139.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 139.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 139.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 139.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 138.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 138.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 137.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 137.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 137.2
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 136.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 136.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 135.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 135.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 133.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 133.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 133.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 133.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 133.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 133.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 133.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 132.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 132.8
GTEX-1192X-2526-SM-59868 50-59 years, male 132.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 132.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 132.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 132.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 132.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 132.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 132.0
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 131.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 131.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 131.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 131.6
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 131.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 131.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 131.0
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 130.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 129.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 129.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 129.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 128.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 127.2
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 127.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 127.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 126.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 126.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 126.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 125.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 125.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 125.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 125.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 125.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 125.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 124.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 124.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 124.2
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 124.0
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 123.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 123.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 123.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 123.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 123.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 122.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 122.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 122.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 122.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 121.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 121.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 121.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 121.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 120.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 120.1
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 119.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 119.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 119.1
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 119.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 118.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 117.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 117.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 117.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 117.4
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 117.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 116.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 115.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 115.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 115.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 115.0
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 114.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 114.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 114.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 114.6
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 114.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 114.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 113.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 113.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 113.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 113.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 113.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 113.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 113.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 111.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 111.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 110.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 110.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 110.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 109.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 109.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 109.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 109.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 109.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 109.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 108.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 108.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 107.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 106.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 106.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 106.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 104.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 104.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 104.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 102.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 102.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 102.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 102.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 101.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 101.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 98.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 98.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 97.7
GTEX-178AV-1226-SM-GOR11 40-49 years, male 97.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 97.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 95.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 93.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 93.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 91.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 86.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 86.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

214.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 214.5
FF:10024-101D6 15,40,85 years, mixed 214.5

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