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  • RPL17-C18orf32
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:177.6 nTPM
HPA Brain:42.7 nTPM
GTEx:177.6 nTPM
FANTOM5:27.3 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.7
Sample id Sample description nTPM
Amygdala
nTPM: 42.7
2514 Male, age 75, right hemisphere 54.3
2814 Male, age 76, right hemisphere 54.1
2695 Female, age 67, right hemisphere 44.2
1987 Female, age 91, left hemisphere 34.2
2517 Female, age 94, left hemisphere 26.7
Basal amygdala
nTPM: 28.8
1955 Male, age 76, both hemispheres 40.7
2609 Male, age 75, right hemisphere 40.2
2110 Male, age 80, left hemisphere 27.4
2827 Female, age 67, right hemisphere 25.6
2685 Female, age 94, left hemisphere 20.2
2243 Female, age 91, right hemisphere 18.7
Central amygdala
nTPM: 35.5
1905 Male, age 76, both hemispheres 45.5
2515 Male, age 75, right hemisphere 44.5
2826 Female, age 94, left hemisphere 35.9
2701 Female, age 91, right hemisphere 25.8
2239 Male, age 80, left hemisphere 25.6
Corticomedial amygdala
nTPM: 33.0
2428 Male, age 75, right hemisphere 50.1
2240 Male, age 76, both hemispheres 36.9
2429 Female, age 94, left hemisphere 36.7
2829 Male, age 80, left hemisphere 32.7
2242 Female, age 91, right hemisphere 23.6
2535 Female, age 67, right hemisphere 17.9
Lateral amygdala
nTPM: 29.4
1883 Male, age 76, both hemispheres 45.0
2516 Male, age 75, right hemisphere 44.0
2830 Female, age 67, right hemisphere 30.1
2534 Female, age 94, left hemisphere 25.8
2256 Male, age 80, left hemisphere 20.6
2255 Female, age 91, right hemisphere 10.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

177.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 177.6
Samples: 181

Max nTPM: 564.3
Min nTPM: 90.0
Std nTPM: 55.6
Median nTPM: 169.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 564.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 390.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 378.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 355.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 333.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 326.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 287.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 280.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 277.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 261.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 249.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 248.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 247.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 245.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 234.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 230.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 229.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 229.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 224.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 222.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 222.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 222.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 219.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 214.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 213.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 213.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 210.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 209.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 209.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 208.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 207.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 207.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 207.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 205.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 205.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 204.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 203.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 203.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 202.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 201.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 201.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 200.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 199.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 197.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 197.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 196.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 195.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 195.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 195.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 194.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 193.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 192.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 191.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 191.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 191.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 189.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 189.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 188.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 188.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 187.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 187.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 185.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 185.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 185.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 184.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 183.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 182.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 182.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 181.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 180.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 179.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 179.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 179.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 179.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 179.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 178.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 176.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 175.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 175.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 175.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 175.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 174.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 174.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 172.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 171.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 171.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 171.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 171.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 170.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 170.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 169.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 168.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 168.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 167.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 167.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 166.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 165.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 165.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 163.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 163.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 163.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 163.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 161.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 161.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 161.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 159.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 158.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 158.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 157.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 157.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 157.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 157.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 157.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 156.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 156.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 156.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 155.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 154.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 154.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 153.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 152.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 152.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 152.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 151.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 150.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 149.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 149.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 148.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 147.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 147.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 146.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 146.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 143.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 143.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 142.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 142.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 141.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 140.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 139.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 139.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 139.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 138.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 138.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 138.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 138.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 137.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 137.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 135.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 135.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 135.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 135.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 135.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 134.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 134.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 133.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 132.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 132.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 132.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 132.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 129.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 128.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 127.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 125.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 125.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 124.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 123.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 121.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 120.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 120.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 119.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 116.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 115.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 114.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 114.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 109.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 108.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 106.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 102.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 90.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 27.3
FF:10151-102I7 76 years, female 27.3

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