MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.8 nTPM
HPA Brain:36.2 nTPM
GTEx:32.8 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Pig:30.7 nTPM
Mouse:23.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.4
1827 Male, age 72, unknown 36.8
2411 Female, age 72, unknown 36.2
1833 Male, age 53, unknown 35.8
2019 Male, age 18, unknown 35.5
2219 Male, age 76, both hemispheres 35.4
2666 Male, age 74, left hemisphere 34.7
1870 Female, age 42, unknown 34.5
2828 Female, age 72, unknown 33.6
1830 Male, age 51, unknown 33.2
2586 Male, age 75, left hemisphere 27.9
Dorsal raphe nucleus
nTPM: 34.1
1828 Male, age 53, unknown 35.4
2016 Female, age 72, unknown 34.7
2047 Male, age 72, unknown 34.5
2750 Male, age 76, both hemispheres 34.2
2298 Female, age 72, unknown 31.9
Inferior colliculus
nTPM: 35.0
1848 Female, age 42, unknown 36.8
2849 Male, age 72, unknown 34.9
2097 Female, age 72, unknown 34.3
1890 Male, age 53, unknown 34.2
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Periaquaductal grey, anterior
nTPM: 31.8
2502 Female, age 75, unknown 32.9
1795 Male, age 51, unknown 31.5
1947 Male, age 18, unknown 30.9
Periaquaductal grey, dorsal
nTPM: 35.6
1840 Male, age 53, unknown 37.9
2850 Male, age 76, both hemispheres 36.5
1831 Male, age 72, unknown 34.6
2464 Female, age 72, unknown 33.3
Periaquaductal grey, lateral
nTPM: 32.2
2272 Male, age 74, both hemispheres 33.8
2053 Male, age 18, unknown 31.5
2140 Male, age 76, both hemispheres 31.2
Pretectal area
nTPM: 36.2
1816 Male, age 51, unknown 39.6
2273 Male, age 74, both hemispheres 38.0
2407 Male, age 75, both hemispheres 38.0
1815 Male, age 53, unknown 37.1
2667 Female, age 75, unknown 36.7
2007 Male, age 72, unknown 36.2
1817 Female, age 42, unknown 35.8
1944 Female, age 72, unknown 35.7
2825 Male, age 18, unknown 35.6
2224 Female, age 72, unknown 34.0
2316 Male, age 76, right hemisphere 32.0
Red nucleus
nTPM: 34.0
2584 Male, age 75, left hemisphere 38.8
2588 Male, age 74, left hemisphere 36.3
2823 Male, age 76, right hemisphere 36.3
1821 Female, age 72, unknown 34.9
2227 Male, age 72, unknown 34.3
1954 Female, age 42, unknown 33.8
2785 Male, age 18, unknown 33.1
1904 Male, age 53, unknown 32.5
2503 Female, age 72, unknown 32.2
2725 Female, age 75, unknown 32.1
1865 Male, age 51, unknown 31.9
2769 Male, age 72, unknown 31.2
Substantia nigra
nTPM: 35.2
2241 Male, age 72, unknown 40.1
1889 Female, age 72, unknown 37.0
1916 Female, age 42, unknown 36.1
1941 Male, age 53, unknown 34.9
2583 Male, age 75, right hemisphere 34.9
1851 Male, age 51, unknown 34.7
2699 Male, age 18, unknown 34.7
2590 Female, age 75, unknown 33.9
2409 Female, age 72, unknown 33.3
2665 Male, age 74, both hemispheres 32.0
Superior colliculus
nTPM: 34.9
2664 Male, age 75, both hemispheres 40.0
2261 Male, age 18, unknown 37.1
1839 Male, age 51, unknown 36.3
2668 Female, age 75, unknown 36.2
1895 Male, age 76, right hemisphere 34.7
2087 Female, age 72, unknown 34.6
2587 Male, age 74, left hemisphere 34.4
1913 Female, age 42, unknown 32.7
1796 Male, age 53, unknown 31.7
1995 Male, age 72, unknown 31.2
Ventral tegmental area
nTPM: 34.1
2218 Male, age 76, both hemispheres 35.8
2223 Female, age 72, unknown 34.9
2021 Male, age 53, unknown 33.9
2410 Female, age 72, unknown 33.7
1915 Female, age 42, unknown 33.3
1942 Male, age 51, unknown 33.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.8
Samples: 183

Max nTPM: 52.3
Min nTPM: 17.8
Std nTPM: 6.5
Median nTPM: 31.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 52.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 50.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 49.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.7
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 48.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 46.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 45.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 45.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 45.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 45.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 24.6
Sample A Female 29.5
Sample B Female 27.4
Sample C Male 28.6
Sample D Male 24.6
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 31.5
Min nTPM: 30.1
Sample A Female 31.5
Sample B Female 30.7
Sample C Male 30.1
Sample D Male 30.4
Periaqueductal gray
nTPM: 28.4
Samples: 3

Max nTPM: 29.8
Min nTPM: 26.9
Sample B Female 26.9
Sample C Male 28.6
Sample D Male 29.8
Superior colliculi
nTPM: 28.6
Samples: 4

Max nTPM: 31.0
Min nTPM: 26.3
Sample A Female 29.4
Sample B Female 26.3
Sample C Male 31.0
Sample D Male 27.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 24.3
Min nTPM: 23.1
Sample A Male 24.3
Sample B Male 24.1
Sample C Female 23.1
Sample D Female 23.7

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