MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:360.1 nTPM
HPA Brain:257.0 nTPM
GTEx:360.1 nTPM
FANTOM5:311.4 Scaled Tags Per Million
Pig:297.7 nTPM
Mouse:281.5 nTPM
Allen mouse:5.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 257.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 182.9
2666 Male, age 74, left hemisphere 256.6
1870 Female, age 42, unknown 199.4
1827 Male, age 72, unknown 196.6
2586 Male, age 75, left hemisphere 190.0
2219 Male, age 76, both hemispheres 188.1
2411 Female, age 72, unknown 172.3
1833 Male, age 53, unknown 171.6
2828 Female, age 72, unknown 169.0
1830 Male, age 51, unknown 156.3
2019 Male, age 18, unknown 129.4
Dorsal raphe nucleus
nTPM: 215.5
2047 Male, age 72, unknown 255.7
2298 Female, age 72, unknown 248.8
1828 Male, age 53, unknown 212.2
2750 Male, age 76, both hemispheres 202.9
2016 Female, age 72, unknown 157.7
Inferior colliculus
nTPM: 163.7
2849 Male, age 72, unknown 178.4
2097 Female, age 72, unknown 162.3
1848 Female, age 42, unknown 159.3
1890 Male, age 53, unknown 154.8
Median raphe nucleus
nTPM: 257.0
2220 Male, age 76, midline 257.0
Periaquaductal grey, anterior
nTPM: 217.8
1947 Male, age 18, unknown 280.5
1795 Male, age 51, unknown 209.3
2502 Female, age 75, unknown 163.6
Periaquaductal grey, dorsal
nTPM: 169.8
2850 Male, age 76, both hemispheres 204.8
1840 Male, age 53, unknown 170.9
1831 Male, age 72, unknown 165.5
2464 Female, age 72, unknown 137.9
Periaquaductal grey, lateral
nTPM: 157.0
2053 Male, age 18, unknown 170.9
2140 Male, age 76, both hemispheres 156.0
2272 Male, age 74, both hemispheres 144.0
Pretectal area
nTPM: 190.5
2224 Female, age 72, unknown 229.7
1816 Male, age 51, unknown 228.2
1817 Female, age 42, unknown 225.1
2007 Male, age 72, unknown 210.4
2667 Female, age 75, unknown 210.2
2825 Male, age 18, unknown 200.3
1815 Male, age 53, unknown 198.4
1944 Female, age 72, unknown 186.5
2273 Male, age 74, both hemispheres 143.3
2407 Male, age 75, both hemispheres 136.5
2316 Male, age 76, right hemisphere 127.1
Red nucleus
nTPM: 165.7
1821 Female, age 72, unknown 218.0
2725 Female, age 75, unknown 195.0
2584 Male, age 75, left hemisphere 167.5
1954 Female, age 42, unknown 167.2
2588 Male, age 74, left hemisphere 163.3
1865 Male, age 51, unknown 162.4
2503 Female, age 72, unknown 159.8
2769 Male, age 72, unknown 156.6
2823 Male, age 76, right hemisphere 152.2
1904 Male, age 53, unknown 151.8
2227 Male, age 72, unknown 149.5
2785 Male, age 18, unknown 144.5
Substantia nigra
nTPM: 224.1
1916 Female, age 42, unknown 312.9
1851 Male, age 51, unknown 253.0
2665 Male, age 74, both hemispheres 245.8
1889 Female, age 72, unknown 229.0
1941 Male, age 53, unknown 219.7
2699 Male, age 18, unknown 218.0
2241 Male, age 72, unknown 216.0
2409 Female, age 72, unknown 197.5
2583 Male, age 75, right hemisphere 175.0
2590 Female, age 75, unknown 174.4
Superior colliculus
nTPM: 166.5
2668 Female, age 75, unknown 203.1
2587 Male, age 74, left hemisphere 200.1
1796 Male, age 53, unknown 196.5
2261 Male, age 18, unknown 171.1
1895 Male, age 76, right hemisphere 164.7
1839 Male, age 51, unknown 164.1
2087 Female, age 72, unknown 154.8
1913 Female, age 42, unknown 149.3
2664 Male, age 75, both hemispheres 138.6
1995 Male, age 72, unknown 122.4
Ventral tegmental area
nTPM: 218.1
1915 Female, age 42, unknown 255.2
2218 Male, age 76, both hemispheres 251.4
2410 Female, age 72, unknown 220.9
2021 Male, age 53, unknown 203.1
2223 Female, age 72, unknown 193.9
1942 Male, age 51, unknown 184.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 360.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 360.1
Samples: 183

Max nTPM: 600.4
Min nTPM: 196.1
Std nTPM: 80.6
Median nTPM: 349.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 600.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 598.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 586.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 564.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 561.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 549.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 523.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 520.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 520.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 514.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 514.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 311.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 311.4
FF:10158-103A5 76 years, female 311.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 297.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 270.1
Samples: 4

Max nTPM: 352.8
Min nTPM: 201.4
Sample A Female 352.8
Sample B Female 201.4
Sample C Male 323.9
Sample D Male 202.1
Midbrain
nTPM: 271.8
Samples: 4

Max nTPM: 342.1
Min nTPM: 241.0
Sample A Female 255.7
Sample B Female 241.0
Sample C Male 342.1
Sample D Male 248.4
Periaqueductal gray
nTPM: 206.9
Samples: 3

Max nTPM: 239.9
Min nTPM: 188.6
Sample B Female 192.1
Sample C Male 239.9
Sample D Male 188.6
Superior colliculi
nTPM: 297.7
Samples: 4

Max nTPM: 365.4
Min nTPM: 203.7
Sample A Female 336.0
Sample B Female 203.7
Sample C Male 365.4
Sample D Male 285.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 281.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 281.5
Samples: 4

Max nTPM: 308.7
Min nTPM: 265.1
Sample A Male 308.7
Sample B Male 265.1
Sample C Female 270.4
Sample D Female 281.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
75934529 Antisense, RP_060530_01_E05, Mouse strain C57BL/6J (56 days, male) 8.3
68499398 Antisense, RP_050118_01_E02, Mouse strain C57BL/6J (56 days, male) 2.2

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