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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:110.9 nTPM
HPA Brain:254.3 nTPM
GTEx:110.9 nTPM
FANTOM5:142.9 Scaled Tags Per Million
Pig:201.2 nTPM
Mouse:457.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

254.3
Sample id Sample description nTPM
Amygdala
nTPM: 110.4
2517 Female, age 94, left hemisphere 202.0
1987 Female, age 91, left hemisphere 156.3
2514 Male, age 75, right hemisphere 105.4
2695 Female, age 67, right hemisphere 53.1
2814 Male, age 76, right hemisphere 35.1
Basal amygdala
nTPM: 254.3
2243 Female, age 91, right hemisphere 407.6
2685 Female, age 94, left hemisphere 366.6
2827 Female, age 67, right hemisphere 252.0
2110 Male, age 80, left hemisphere 199.4
2609 Male, age 75, right hemisphere 160.8
1955 Male, age 76, both hemispheres 139.7
Central amygdala
nTPM: 118.0
2826 Female, age 94, left hemisphere 245.8
2239 Male, age 80, left hemisphere 158.3
2515 Male, age 75, right hemisphere 91.7
2701 Female, age 91, right hemisphere 61.5
1905 Male, age 76, both hemispheres 32.7
Corticomedial amygdala
nTPM: 226.2
2242 Female, age 91, right hemisphere 393.2
2829 Male, age 80, left hemisphere 283.0
2535 Female, age 67, right hemisphere 216.3
2429 Female, age 94, left hemisphere 205.3
2428 Male, age 75, right hemisphere 134.0
2240 Male, age 76, both hemispheres 125.3
Lateral amygdala
nTPM: 147.6
2534 Female, age 94, left hemisphere 304.9
2256 Male, age 80, left hemisphere 199.1
2830 Female, age 67, right hemisphere 119.9
2255 Female, age 91, right hemisphere 112.8
2516 Male, age 75, right hemisphere 82.1
1883 Male, age 76, both hemispheres 67.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 110.9
Samples: 181

Max nTPM: 370.6
Min nTPM: 12.4
Std nTPM: 66.0
Median nTPM: 94.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 370.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 323.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 302.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 282.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 264.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 263.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 257.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 256.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 254.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 232.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 232.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 226.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 206.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 205.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 204.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 201.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 197.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 197.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 193.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 192.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 191.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 191.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 189.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 183.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 180.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 176.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 175.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 172.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 169.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 168.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 168.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 167.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 166.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 166.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 164.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 162.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 159.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 159.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 159.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 158.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 157.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 157.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 157.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 156.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 154.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 153.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 152.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 150.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 150.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 148.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 147.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 147.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 146.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 146.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 144.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 141.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 141.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 139.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 138.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 135.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 133.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 132.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 132.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 130.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 129.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 128.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 126.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 124.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 123.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 118.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 117.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 117.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 114.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 113.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 113.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 112.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 109.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 108.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 108.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 108.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 107.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 105.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 105.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 104.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 101.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 100.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 96.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 95.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 94.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 93.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 93.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 93.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 92.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 91.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 90.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 89.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 89.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 89.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 88.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 87.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 85.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 85.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 82.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 82.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 82.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 81.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 81.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 80.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 76.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 75.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 72.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 71.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 70.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 69.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 69.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 68.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 68.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 68.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 68.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 64.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 64.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 61.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 60.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 60.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 60.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 60.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 59.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 59.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 58.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 58.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 58.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 57.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 55.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 55.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 55.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 54.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 54.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 52.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 52.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 50.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 50.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 49.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 49.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 48.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 48.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 48.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 48.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 47.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 47.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 46.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 45.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 43.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 43.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 41.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 40.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 39.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 39.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 38.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 38.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 37.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 37.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 36.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 35.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 35.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 33.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 33.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 33.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 32.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 30.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 30.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 29.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 26.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 17.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 12.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 142.9
FF:10151-102I7 76 years, female 142.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.2
Pig sample Sample description nTPM
Amygdala
nTPM: 201.2
Samples: 4

Max nTPM: 331.5
Min nTPM: 78.6
Sample A Female 331.5
Sample B Female 78.6
Sample C Male 215.4
Sample D Male 179.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

457.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 457.8
Samples: 4

Max nTPM: 502.6
Min nTPM: 384.6
Sample A Male 502.6
Sample B Male 469.9
Sample C Female 384.6
Sample D Female 473.9

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