MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:839.4 nTPM
HPA Brain:375.6 nTPM
GTEx:839.4 nTPM
FANTOM5:180.6 Scaled Tags Per Million
Pig:1528.0 nTPM
Mouse:220.6 nTPM
Allen mouse:20.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 375.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 330.3
2666 Male, age 74, left hemisphere 397.0
2586 Male, age 75, left hemisphere 370.9
2411 Female, age 72, unknown 352.2
1870 Female, age 42, unknown 337.4
1827 Male, age 72, unknown 317.8
2828 Female, age 72, unknown 315.7
2219 Male, age 76, both hemispheres 314.2
1833 Male, age 53, unknown 304.4
2019 Male, age 18, unknown 297.6
1830 Male, age 51, unknown 296.4
Dorsal raphe nucleus
nTPM: 334.5
2298 Female, age 72, unknown 388.3
2750 Male, age 76, both hemispheres 349.2
2047 Male, age 72, unknown 315.7
1828 Male, age 53, unknown 311.7
2016 Female, age 72, unknown 307.8
Inferior colliculus
nTPM: 289.5
2097 Female, age 72, unknown 300.0
1890 Male, age 53, unknown 291.2
2849 Male, age 72, unknown 288.7
1848 Female, age 42, unknown 278.0
Median raphe nucleus
nTPM: 348.7
2220 Male, age 76, midline 348.7
Periaquaductal grey, anterior
nTPM: 358.9
2502 Female, age 75, unknown 378.2
1795 Male, age 51, unknown 352.2
1947 Male, age 18, unknown 346.4
Periaquaductal grey, dorsal
nTPM: 306.1
1840 Male, age 53, unknown 327.3
1831 Male, age 72, unknown 323.2
2850 Male, age 76, both hemispheres 294.2
2464 Female, age 72, unknown 279.6
Periaquaductal grey, lateral
nTPM: 280.2
2053 Male, age 18, unknown 314.4
2140 Male, age 76, both hemispheres 275.2
2272 Male, age 74, both hemispheres 250.9
Pretectal area
nTPM: 309.9
1816 Male, age 51, unknown 359.0
1815 Male, age 53, unknown 346.9
1817 Female, age 42, unknown 340.8
2224 Female, age 72, unknown 336.2
2007 Male, age 72, unknown 322.2
2825 Male, age 18, unknown 304.1
2316 Male, age 76, right hemisphere 301.8
1944 Female, age 72, unknown 296.3
2407 Male, age 75, both hemispheres 278.1
2667 Female, age 75, unknown 276.2
2273 Male, age 74, both hemispheres 247.0
Red nucleus
nTPM: 331.0
2503 Female, age 72, unknown 396.0
1821 Female, age 72, unknown 373.2
1865 Male, age 51, unknown 355.2
1904 Male, age 53, unknown 342.7
2588 Male, age 74, left hemisphere 336.6
2725 Female, age 75, unknown 334.2
2584 Male, age 75, left hemisphere 333.1
2227 Male, age 72, unknown 319.6
2769 Male, age 72, unknown 319.3
2785 Male, age 18, unknown 306.5
1954 Female, age 42, unknown 292.6
2823 Male, age 76, right hemisphere 263.5
Substantia nigra
nTPM: 373.3
1851 Male, age 51, unknown 445.1
1916 Female, age 42, unknown 437.4
2699 Male, age 18, unknown 426.5
2665 Male, age 74, both hemispheres 402.4
2409 Female, age 72, unknown 375.1
2241 Male, age 72, unknown 370.1
2590 Female, age 75, unknown 342.9
1889 Female, age 72, unknown 335.2
1941 Male, age 53, unknown 321.8
2583 Male, age 75, right hemisphere 276.6
Superior colliculus
nTPM: 331.2
2587 Male, age 74, left hemisphere 385.9
2668 Female, age 75, unknown 370.0
1913 Female, age 42, unknown 356.1
1796 Male, age 53, unknown 352.2
1995 Male, age 72, unknown 345.6
2664 Male, age 75, both hemispheres 326.9
2261 Male, age 18, unknown 315.4
2087 Female, age 72, unknown 294.5
1895 Male, age 76, right hemisphere 283.7
1839 Male, age 51, unknown 281.8
Ventral tegmental area
nTPM: 375.6
2410 Female, age 72, unknown 416.2
1915 Female, age 42, unknown 411.6
2223 Female, age 72, unknown 381.5
2021 Male, age 53, unknown 367.2
2218 Male, age 76, both hemispheres 350.6
1942 Male, age 51, unknown 326.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 839.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 839.4
Samples: 183

Max nTPM: 1761.9
Min nTPM: 358.9
Std nTPM: 259.4
Median nTPM: 792.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1761.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1724.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1558.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1541.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1509.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1500.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1423.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1416.0
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1414.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1384.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1362.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 180.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 180.6
FF:10158-103A5 76 years, female 180.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1528.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1528.1
Samples: 4

Max nTPM: 1843.8
Min nTPM: 1312.1
Sample A Female 1843.8
Sample B Female 1480.3
Sample C Male 1312.1
Sample D Male 1476.0
Midbrain
nTPM: 1513.0
Samples: 4

Max nTPM: 2248.3
Min nTPM: 1067.5
Sample A Female 2248.3
Sample B Female 1467.1
Sample C Male 1269.0
Sample D Male 1067.5
Periaqueductal gray
nTPM: 1199.8
Samples: 3

Max nTPM: 1305.5
Min nTPM: 1138.6
Sample B Female 1138.6
Sample C Male 1305.5
Sample D Male 1155.3
Superior colliculi
nTPM: 1467.2
Samples: 4

Max nTPM: 1833.7
Min nTPM: 1167.4
Sample A Female 1833.7
Sample B Female 1167.4
Sample C Male 1446.4
Sample D Male 1421.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 220.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 220.6
Samples: 4

Max nTPM: 247.0
Min nTPM: 190.7
Sample A Male 247.0
Sample B Male 204.6
Sample C Female 190.7
Sample D Female 240.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.8
69013702 Antisense, RP_050309_02_G10, Mouse strain C57BL/6J (56 days, male) 20.8

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