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RPS28
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  • SUMMARY

  • TISSUE

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  • RPS28
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:142.3 nTPM
FANTOM5:6.8 Scaled Tags Per Million
Pig:658.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047132
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 142.3
Samples: 300

Max nTPM: 325.1
Min nTPM: 45.4
Std nTPM: 44.0
Median nTPM: 138.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 325.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 296.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 290.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 282.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 274.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 267.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 238.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 234.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 232.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 231.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 229.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 229.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 227.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 224.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 221.3
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 218.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 216.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 216.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 215.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 214.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 212.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 210.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 210.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 209.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 206.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 204.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 203.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 203.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 201.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 200.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 199.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 197.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 197.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 195.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 194.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 194.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 194.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 193.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 192.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 192.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 188.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 188.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 188.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 187.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 187.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 186.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 184.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 183.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 183.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 180.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 179.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 178.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 178.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 177.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 177.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 177.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 177.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 175.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 175.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 174.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 173.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 172.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 172.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 171.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 171.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 171.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 170.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 170.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 169.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 169.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 169.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 168.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 166.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 166.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 166.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 166.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 165.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 165.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 164.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 163.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 163.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 161.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 161.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 161.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 161.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 160.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 160.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 159.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 157.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 157.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 157.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 157.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 156.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 156.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 156.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 156.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 155.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 154.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 153.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 153.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 153.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 152.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 152.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 151.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 151.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 151.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 151.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 150.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 150.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 150.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 150.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 149.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 148.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 148.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 147.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 146.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 146.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 146.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 146.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 146.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 145.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 145.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 145.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 145.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 145.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 145.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 144.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 144.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 144.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 144.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 143.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 143.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 143.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 143.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 143.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 143.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 143.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 142.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 142.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 142.1
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 141.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 141.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 140.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 140.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 140.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 140.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 139.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 139.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 139.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 138.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 138.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 138.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 138.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 138.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 137.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 136.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 136.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 136.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 136.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 136.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 134.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 133.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 133.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 133.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 133.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 133.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 132.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 132.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 132.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 132.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 130.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 130.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 130.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 130.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 129.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 129.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 129.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 129.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 128.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 128.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 127.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 127.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 127.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 127.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 127.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 126.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 126.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 126.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 124.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 124.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 124.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 123.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 123.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 122.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 122.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 122.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 121.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 120.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 120.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 120.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 120.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 120.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 119.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 119.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 119.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 119.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 119.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 118.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 118.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 118.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 118.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 117.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 117.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 116.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 116.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 116.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 116.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 115.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 115.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 115.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 114.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 114.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 114.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 113.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 113.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 112.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 112.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 111.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 110.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 110.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 109.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 109.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 109.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 109.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 108.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 107.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 107.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 107.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 106.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 106.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 106.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 106.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 106.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 106.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 105.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 105.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 104.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 103.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 102.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 102.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 102.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 101.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 100.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 99.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 99.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 99.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 99.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 98.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 98.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 97.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 97.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 96.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 94.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 94.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 94.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 93.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 92.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 92.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 91.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 91.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 91.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 90.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 90.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 90.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 90.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 86.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 86.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 86.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 83.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 82.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 80.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 80.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 79.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 79.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 78.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 78.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 77.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 76.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 75.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 75.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 73.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 70.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 70.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 70.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 68.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 65.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 62.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 52.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 51.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 45.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.8
FF:10164-103B2 76 years, female 6.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

658.1
Pig sample Sample description nTPM
Caudate
nTPM: 658.2
Samples: 4

Max nTPM: 714.7
Min nTPM: 601.2
Sample A Female 601.2
Sample B Female 702.9
Sample C Male 714.7
Sample D Male 613.8

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