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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:233.9 nTPM
GTEx:233.9 nTPM
FANTOM5:11.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047132
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 233.9
Samples: 170

Max nTPM: 570.0
Min nTPM: 103.7
Std nTPM: 72.2
Median nTPM: 218.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 570.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 475.9
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 454.1
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 404.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 403.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 402.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 384.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 384.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 377.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 360.9
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 345.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 341.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 341.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 328.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 326.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 322.4
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 322.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 322.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 319.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 319.0
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 318.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 312.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 310.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 308.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 306.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 296.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 294.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 293.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 290.8
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 290.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 288.2
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 288.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 287.2
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 287.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 284.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 283.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 283.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 282.0
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 278.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 277.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 274.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 274.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 270.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 268.8
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 268.7
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 265.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 264.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 263.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 259.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 256.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 256.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 255.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 255.3
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 254.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 253.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 251.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 251.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 250.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 250.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 249.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 249.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 249.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 248.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 247.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 246.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 244.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 244.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 243.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 239.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 237.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 235.4
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 232.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 231.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 230.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 229.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 228.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 227.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 223.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 222.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 221.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 221.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 221.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 220.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 218.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 218.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 218.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 218.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 217.4
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 217.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 217.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 216.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 215.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 214.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 214.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 214.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 213.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 213.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 212.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 211.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 211.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 210.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 210.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 209.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 208.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 207.9
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 205.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 203.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 202.4
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 201.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 200.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 199.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 198.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 197.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 197.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 197.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 196.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 196.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 196.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 196.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 196.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 193.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 193.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 192.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 192.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 191.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 190.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 190.5
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 190.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 190.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 189.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 186.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 185.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 183.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 183.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 178.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 178.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 176.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 176.7
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 176.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 175.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 175.0
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 173.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 172.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 169.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 169.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 168.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 167.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 165.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 164.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 163.2
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 159.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 158.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 157.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 154.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 150.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 149.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 148.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 141.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 139.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 134.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 132.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 132.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 129.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 128.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 127.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 119.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 117.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 111.7
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 108.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 103.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 11.9
FF:10204-103F6 68 years, female 11.9

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