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  • TISSUE

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  • HLA-B
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:308.1 nTPM
HPA Brain:5.4 nTPM
GTEx:308.1 nTPM
FANTOM5:338.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 3.5
1981 Female, age 72, midline 5.2
2816 Male, age 47, midline 4.2
2565 Male, age 75, midline 4.0
2048 Male, age 55, midline 2.5
2194 Female, age 79, both hemispheres 1.7
Cervical spinal cord, dorsal horn
nTPM: 5.4
2297 Male, age 75, both hemispheres 9.9
1877 Male, age 55, unknown 5.7
2721 Male, age 90, both hemispheres 4.5
2069 Male, age 47, both hemispheres 4.2
2296 Male, age 66, both hemispheres 4.1
2173 Female, age 72, unknown 3.8
Cervical spinal cord, ventral horn
nTPM: 4.5
2098 Female, age 72, unknown 11.0
2480 Male, age 75, both hemispheres 4.2
2295 Male, age 66, both hemispheres 4.1
2809 Male, age 90, both hemispheres 4.0
2068 Male, age 55, unknown 2.1
2820 Female, age 79, both hemispheres 1.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

308.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 308.1
Samples: 204

Max nTPM: 2831.8
Min nTPM: 85.8
Std nTPM: 227.8
Median nTPM: 273.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 2831.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1078.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 855.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 805.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 680.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 669.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 589.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 579.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 568.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 564.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 558.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 547.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 546.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 543.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 539.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 526.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 515.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 513.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 504.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 482.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 471.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 465.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 463.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 460.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 453.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 447.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 444.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 441.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 438.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 431.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 425.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 424.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 422.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 421.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 420.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 414.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 413.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 411.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 396.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 389.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 389.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 387.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 386.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 384.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 383.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 382.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 380.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 378.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 375.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 373.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 373.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 365.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 363.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 363.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 362.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 362.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 349.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 347.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 341.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 341.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 340.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 339.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 336.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 332.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 332.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 331.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 329.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 328.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 324.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 321.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 320.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 318.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 313.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 311.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 309.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 308.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 306.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 306.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 305.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 303.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 303.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 302.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 300.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 299.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 297.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 294.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 290.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 286.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 285.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 284.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 283.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 283.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 282.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 281.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 280.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 277.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 277.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 275.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 275.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 274.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 274.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 274.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 272.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 272.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 268.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 266.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 265.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 258.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 258.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 257.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 257.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 257.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 255.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 255.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 254.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 251.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 250.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 248.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 247.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 246.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 243.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 242.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 241.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 241.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 238.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 236.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 233.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 231.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 231.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 231.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 229.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 226.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 225.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 225.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 223.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 222.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 221.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 220.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 218.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 217.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 214.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 212.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 212.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 210.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 208.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 208.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 208.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 207.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 205.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 205.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 203.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 201.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 200.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 194.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 190.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 188.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 187.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 187.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 184.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 183.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 182.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 182.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 181.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 181.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 172.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 172.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 171.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 171.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 170.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 168.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 167.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 167.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 164.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 163.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 162.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 161.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 159.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 158.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 151.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 151.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 149.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 149.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 148.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 146.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 145.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 141.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 139.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 136.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 136.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 135.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 134.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 134.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 126.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 124.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 120.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 116.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 116.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 113.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 98.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 97.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 97.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 91.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 88.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 85.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

338.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 338.5
FF:10159-103A6 76 years, female 343.5
FF:10181-103D1 60 years, female 333.6

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