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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:74.1 nTPM
HPA Brain:48.5 nTPM
GTEx:74.1 nTPM
FANTOM5:59.3 Scaled Tags Per Million
Pig:0.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 32.0
2194 Female, age 79, both hemispheres 43.5
1981 Female, age 72, midline 33.6
2048 Male, age 55, midline 31.8
2565 Male, age 75, midline 27.1
2816 Male, age 47, midline 23.9
Cervical spinal cord, dorsal horn
nTPM: 41.7
2721 Male, age 90, both hemispheres 62.4
1877 Male, age 55, unknown 52.7
2069 Male, age 47, both hemispheres 50.3
2297 Male, age 75, both hemispheres 37.7
2173 Female, age 72, unknown 35.5
2296 Male, age 66, both hemispheres 11.7
Cervical spinal cord, ventral horn
nTPM: 48.5
2295 Male, age 66, both hemispheres 80.1
2809 Male, age 90, both hemispheres 55.4
2820 Female, age 79, both hemispheres 45.7
2068 Male, age 55, unknown 41.3
2098 Female, age 72, unknown 40.4
2480 Male, age 75, both hemispheres 28.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 74.1
Samples: 204

Max nTPM: 552.3
Min nTPM: 3.8
Std nTPM: 84.3
Median nTPM: 47.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 552.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 546.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 453.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 383.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 363.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 360.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 332.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 327.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 309.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 233.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 226.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 207.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 187.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 179.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 178.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 158.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 148.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 146.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 143.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 141.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 141.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 140.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 136.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 132.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 131.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 131.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 130.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 130.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 126.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 113.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 113.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 111.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 110.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 109.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 109.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 108.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 106.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 101.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 99.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 97.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 97.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 96.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 95.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 94.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 93.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 91.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 91.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 89.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 89.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 88.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 85.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 84.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 81.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 78.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 77.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 75.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 75.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 74.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 74.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 73.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 73.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 72.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 71.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 70.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 69.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 69.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 67.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 67.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 66.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 66.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 65.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 65.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 65.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 64.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 62.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 59.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 59.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 59.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 59.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 58.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 58.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 57.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 56.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 56.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 56.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 55.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 55.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 55.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 54.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 53.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 52.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 52.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 52.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 52.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 51.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 51.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 51.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 50.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 50.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 49.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 49.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 47.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 47.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 47.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 46.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 46.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 45.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 45.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 45.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 45.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 45.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 45.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 45.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 44.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 43.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 43.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 41.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 40.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 40.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 39.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 38.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 38.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 38.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 37.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 37.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 37.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 37.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 37.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 37.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 36.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 36.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 35.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 35.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 34.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 34.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 33.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 33.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 33.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 33.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 32.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 31.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 31.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 31.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 31.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 30.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 30.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 30.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 29.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 29.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 29.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 29.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 29.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 29.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 29.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 29.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 29.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 28.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 28.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 28.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 28.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 27.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 27.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 27.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 26.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 26.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 26.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 26.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 25.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 24.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 24.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 24.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 24.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 23.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 23.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 23.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 23.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 22.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 22.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 22.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 22.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 22.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 22.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 21.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 21.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 21.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 19.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 18.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 16.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 16.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 16.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 15.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 15.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 15.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 14.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 14.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 14.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 13.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 11.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 10.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 10.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 9.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 7.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 5.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 3.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 59.3
FF:10159-103A6 76 years, female 66.7
FF:10181-103D1 60 years, female 51.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.0
Sample D Male 0.1
Ventral spinal cord
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.0
Sample C Male 0.2
Sample D Male 0.0

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