MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA Brain:44.3 nTPM
GTEx:13.3 nTPM
FANTOM5:97.5 Scaled Tags Per Million
Pig:32.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.7
2411 Female, age 72, unknown 49.5
1830 Male, age 51, unknown 48.2
2019 Male, age 18, unknown 47.0
1833 Male, age 53, unknown 44.5
1870 Female, age 42, unknown 43.1
2219 Male, age 76, both hemispheres 39.9
2828 Female, age 72, unknown 39.5
1827 Male, age 72, unknown 38.3
2666 Male, age 74, left hemisphere 31.4
2586 Male, age 75, left hemisphere 25.2
Dorsal raphe nucleus
nTPM: 39.9
2750 Male, age 76, both hemispheres 45.5
2016 Female, age 72, unknown 42.8
1828 Male, age 53, unknown 38.7
2047 Male, age 72, unknown 37.2
2298 Female, age 72, unknown 35.4
Inferior colliculus
nTPM: 42.7
1848 Female, age 42, unknown 44.4
1890 Male, age 53, unknown 42.9
2097 Female, age 72, unknown 41.9
2849 Male, age 72, unknown 41.6
Median raphe nucleus
nTPM: 35.1
2220 Male, age 76, midline 35.1
Periaquaductal grey, anterior
nTPM: 37.5
1947 Male, age 18, unknown 40.3
2502 Female, age 75, unknown 37.7
1795 Male, age 51, unknown 34.3
Periaquaductal grey, dorsal
nTPM: 40.5
2464 Female, age 72, unknown 43.0
1831 Male, age 72, unknown 42.0
2850 Male, age 76, both hemispheres 39.3
1840 Male, age 53, unknown 37.7
Periaquaductal grey, lateral
nTPM: 42.8
2272 Male, age 74, both hemispheres 45.4
2140 Male, age 76, both hemispheres 43.3
2053 Male, age 18, unknown 39.8
Pretectal area
nTPM: 39.7
2316 Male, age 76, right hemisphere 49.5
2273 Male, age 74, both hemispheres 47.0
2667 Female, age 75, unknown 41.3
1815 Male, age 53, unknown 41.0
2007 Male, age 72, unknown 39.1
2407 Male, age 75, both hemispheres 39.0
2224 Female, age 72, unknown 37.9
1817 Female, age 42, unknown 37.4
2825 Male, age 18, unknown 37.2
1944 Female, age 72, unknown 35.3
1816 Male, age 51, unknown 32.3
Red nucleus
nTPM: 44.3
2503 Female, age 72, unknown 52.2
2823 Male, age 76, right hemisphere 52.2
1865 Male, age 51, unknown 47.8
1821 Female, age 72, unknown 45.7
2769 Male, age 72, unknown 45.7
1904 Male, age 53, unknown 45.4
2785 Male, age 18, unknown 44.9
1954 Female, age 42, unknown 44.6
2227 Male, age 72, unknown 42.8
2588 Male, age 74, left hemisphere 39.5
2725 Female, age 75, unknown 36.7
2584 Male, age 75, left hemisphere 33.9
Substantia nigra
nTPM: 36.3
2590 Female, age 75, unknown 43.2
2409 Female, age 72, unknown 41.0
1889 Female, age 72, unknown 38.0
2699 Male, age 18, unknown 36.6
2583 Male, age 75, right hemisphere 36.1
1941 Male, age 53, unknown 34.9
2665 Male, age 74, both hemispheres 34.5
1851 Male, age 51, unknown 34.3
2241 Male, age 72, unknown 34.3
1916 Female, age 42, unknown 29.7
Superior colliculus
nTPM: 40.1
1895 Male, age 76, right hemisphere 47.7
1913 Female, age 42, unknown 46.4
1995 Male, age 72, unknown 46.0
1839 Male, age 51, unknown 43.9
2587 Male, age 74, left hemisphere 40.4
2668 Female, age 75, unknown 37.7
2087 Female, age 72, unknown 36.2
1796 Male, age 53, unknown 36.1
2261 Male, age 18, unknown 34.3
2664 Male, age 75, both hemispheres 32.0
Ventral tegmental area
nTPM: 37.2
2410 Female, age 72, unknown 42.4
2021 Male, age 53, unknown 38.7
2218 Male, age 76, both hemispheres 37.4
2223 Female, age 72, unknown 36.4
1942 Male, age 51, unknown 35.7
1915 Female, age 42, unknown 32.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 183

Max nTPM: 21.2
Min nTPM: 8.4
Std nTPM: 2.3
Median nTPM: 13.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 18.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 17.7
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 17.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 17.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 17.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 17.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 17.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.5
FF:10158-103A5 76 years, female 97.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.6
Samples: 4

Max nTPM: 35.7
Min nTPM: 26.9
Sample A Female 27.7
Sample B Female 27.9
Sample C Male 26.9
Sample D Male 35.7
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 36.5
Min nTPM: 27.2
Sample A Female 36.5
Sample B Female 34.7
Sample C Male 27.2
Sample D Male 27.7
Periaqueductal gray
nTPM: 32.3
Samples: 3

Max nTPM: 33.9
Min nTPM: 30.4
Sample B Female 32.5
Sample C Male 30.4
Sample D Male 33.9
Superior colliculi
nTPM: 29.7
Samples: 4

Max nTPM: 32.9
Min nTPM: 27.8
Sample A Female 28.8
Sample B Female 27.8
Sample C Male 29.1
Sample D Male 32.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo