MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:36.4 nTPM
GTEx:21.6 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:36.5 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2586 Male, age 75, left hemisphere 47.1
2219 Male, age 76, both hemispheres 39.5
1870 Female, age 42, unknown 36.9
2411 Female, age 72, unknown 35.7
1833 Male, age 53, unknown 35.5
1830 Male, age 51, unknown 33.5
2666 Male, age 74, left hemisphere 33.5
2828 Female, age 72, unknown 32.7
2019 Male, age 18, unknown 31.2
1827 Male, age 72, unknown 30.4
Dorsal raphe nucleus
nTPM: 32.2
2750 Male, age 76, both hemispheres 38.7
2047 Male, age 72, unknown 31.8
2016 Female, age 72, unknown 31.3
1828 Male, age 53, unknown 30.9
2298 Female, age 72, unknown 28.0
Inferior colliculus
nTPM: 29.3
1890 Male, age 53, unknown 30.4
1848 Female, age 42, unknown 29.6
2097 Female, age 72, unknown 29.2
2849 Male, age 72, unknown 28.1
Median raphe nucleus
nTPM: 34.0
2220 Male, age 76, midline 34.0
Periaquaductal grey, anterior
nTPM: 31.9
1947 Male, age 18, unknown 34.1
2502 Female, age 75, unknown 33.9
1795 Male, age 51, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 26.6
1840 Male, age 53, unknown 28.4
2464 Female, age 72, unknown 28.4
1831 Male, age 72, unknown 25.1
2850 Male, age 76, both hemispheres 24.7
Periaquaductal grey, lateral
nTPM: 27.3
2053 Male, age 18, unknown 28.9
2272 Male, age 74, both hemispheres 27.1
2140 Male, age 76, both hemispheres 25.9
Pretectal area
nTPM: 30.0
1817 Female, age 42, unknown 33.7
1815 Male, age 53, unknown 33.1
2667 Female, age 75, unknown 31.9
2825 Male, age 18, unknown 31.4
2007 Male, age 72, unknown 30.9
1816 Male, age 51, unknown 30.4
2407 Male, age 75, both hemispheres 29.2
1944 Female, age 72, unknown 27.8
2224 Female, age 72, unknown 27.7
2316 Male, age 76, right hemisphere 27.4
2273 Male, age 74, both hemispheres 26.8
Red nucleus
nTPM: 36.4
2503 Female, age 72, unknown 39.4
1821 Female, age 72, unknown 39.3
1865 Male, age 51, unknown 39.0
2769 Male, age 72, unknown 39.0
2227 Male, age 72, unknown 38.9
1904 Male, age 53, unknown 38.3
2584 Male, age 75, left hemisphere 37.0
2588 Male, age 74, left hemisphere 36.1
1954 Female, age 42, unknown 35.8
2785 Male, age 18, unknown 34.9
2823 Male, age 76, right hemisphere 30.2
2725 Female, age 75, unknown 28.6
Substantia nigra
nTPM: 36.0
1916 Female, age 42, unknown 46.2
1851 Male, age 51, unknown 40.6
2583 Male, age 75, right hemisphere 40.5
2241 Male, age 72, unknown 39.0
2590 Female, age 75, unknown 34.7
2699 Male, age 18, unknown 33.5
1889 Female, age 72, unknown 33.3
1941 Male, age 53, unknown 31.7
2665 Male, age 74, both hemispheres 31.0
2409 Female, age 72, unknown 29.7
Superior colliculus
nTPM: 30.9
2668 Female, age 75, unknown 35.3
2664 Male, age 75, both hemispheres 34.8
2261 Male, age 18, unknown 32.3
1913 Female, age 42, unknown 31.8
1839 Male, age 51, unknown 30.5
1995 Male, age 72, unknown 30.5
1796 Male, age 53, unknown 30.3
2587 Male, age 74, left hemisphere 30.2
1895 Male, age 76, right hemisphere 29.0
2087 Female, age 72, unknown 24.3
Ventral tegmental area
nTPM: 35.3
2223 Female, age 72, unknown 38.5
2410 Female, age 72, unknown 37.1
1915 Female, age 42, unknown 36.1
1942 Male, age 51, unknown 34.4
2218 Male, age 76, both hemispheres 33.8
2021 Male, age 53, unknown 31.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 183

Max nTPM: 39.5
Min nTPM: 13.7
Std nTPM: 3.9
Median nTPM: 21.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 39.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 37.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 34.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 33.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 29.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 28.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 28.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 28.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.1
FF:10158-103A5 76 years, female 42.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.1
Samples: 4

Max nTPM: 22.0
Min nTPM: 19.0
Sample A Female 22.0
Sample B Female 19.0
Sample C Male 19.7
Sample D Male 19.6
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 27.6
Min nTPM: 17.9
Sample A Female 27.6
Sample B Female 19.4
Sample C Male 20.0
Sample D Male 17.9
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 18.9
Min nTPM: 16.8
Sample B Female 18.9
Sample C Male 18.8
Sample D Male 16.8
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 22.0
Min nTPM: 18.9
Sample A Female 22.0
Sample B Female 19.7
Sample C Male 19.5
Sample D Male 18.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.5
Samples: 4

Max nTPM: 40.1
Min nTPM: 32.2
Sample A Male 32.2
Sample B Male 38.2
Sample C Female 40.1
Sample D Female 35.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69818212 Antisense, RP_050510_04_F07, Mouse strain C57BL/6J (56 days, male) 1.7

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