MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.8 nTPM
HPA Brain:51.0 nTPM
GTEx:95.8 nTPM
FANTOM5:35.4 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:149.9 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.6
1827 Male, age 72, unknown 47.2
2411 Female, age 72, unknown 46.6
2219 Male, age 76, both hemispheres 41.1
2019 Male, age 18, unknown 40.3
1870 Female, age 42, unknown 39.2
2828 Female, age 72, unknown 35.1
2666 Male, age 74, left hemisphere 32.0
1833 Male, age 53, unknown 31.2
1830 Male, age 51, unknown 28.4
2586 Male, age 75, left hemisphere 25.1
Dorsal raphe nucleus
nTPM: 43.0
2298 Female, age 72, unknown 55.3
2047 Male, age 72, unknown 48.7
2750 Male, age 76, both hemispheres 42.7
1828 Male, age 53, unknown 39.9
2016 Female, age 72, unknown 28.3
Inferior colliculus
nTPM: 37.1
2097 Female, age 72, unknown 44.4
1890 Male, age 53, unknown 36.9
1848 Female, age 42, unknown 35.5
2849 Male, age 72, unknown 31.7
Median raphe nucleus
nTPM: 51.0
2220 Male, age 76, midline 51.0
Periaquaductal grey, anterior
nTPM: 41.6
1947 Male, age 18, unknown 46.8
1795 Male, age 51, unknown 44.5
2502 Female, age 75, unknown 33.5
Periaquaductal grey, dorsal
nTPM: 34.4
1840 Male, age 53, unknown 39.1
2464 Female, age 72, unknown 34.0
2850 Male, age 76, both hemispheres 33.1
1831 Male, age 72, unknown 31.5
Periaquaductal grey, lateral
nTPM: 34.5
2272 Male, age 74, both hemispheres 40.5
2053 Male, age 18, unknown 34.1
2140 Male, age 76, both hemispheres 29.0
Pretectal area
nTPM: 44.1
1816 Male, age 51, unknown 56.1
2007 Male, age 72, unknown 53.4
1944 Female, age 72, unknown 51.8
1817 Female, age 42, unknown 50.5
2667 Female, age 75, unknown 49.3
2224 Female, age 72, unknown 47.4
2273 Male, age 74, both hemispheres 41.3
1815 Male, age 53, unknown 39.9
2825 Male, age 18, unknown 34.3
2407 Male, age 75, both hemispheres 31.4
2316 Male, age 76, right hemisphere 29.5
Red nucleus
nTPM: 31.6
1821 Female, age 72, unknown 40.2
2725 Female, age 75, unknown 40.0
2785 Male, age 18, unknown 33.8
2584 Male, age 75, left hemisphere 32.0
2503 Female, age 72, unknown 31.5
2823 Male, age 76, right hemisphere 31.1
1904 Male, age 53, unknown 28.9
1865 Male, age 51, unknown 28.6
1954 Female, age 42, unknown 28.4
2588 Male, age 74, left hemisphere 28.3
2769 Male, age 72, unknown 28.0
2227 Male, age 72, unknown 27.8
Substantia nigra
nTPM: 47.0
1916 Female, age 42, unknown 70.8
1851 Male, age 51, unknown 57.1
1941 Male, age 53, unknown 57.1
2241 Male, age 72, unknown 55.0
1889 Female, age 72, unknown 54.3
2409 Female, age 72, unknown 39.5
2590 Female, age 75, unknown 36.3
2699 Male, age 18, unknown 34.8
2665 Male, age 74, both hemispheres 34.5
2583 Male, age 75, right hemisphere 30.8
Superior colliculus
nTPM: 36.1
1895 Male, age 76, right hemisphere 42.6
2261 Male, age 18, unknown 42.5
1796 Male, age 53, unknown 42.1
2087 Female, age 72, unknown 40.2
2587 Male, age 74, left hemisphere 37.5
2668 Female, age 75, unknown 37.3
2664 Male, age 75, both hemispheres 33.3
1839 Male, age 51, unknown 31.1
1913 Female, age 42, unknown 29.6
1995 Male, age 72, unknown 24.5
Ventral tegmental area
nTPM: 43.6
1915 Female, age 42, unknown 54.0
2218 Male, age 76, both hemispheres 50.7
2410 Female, age 72, unknown 48.8
1942 Male, age 51, unknown 38.1
2021 Male, age 53, unknown 35.6
2223 Female, age 72, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 95.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.8
Samples: 183

Max nTPM: 270.2
Min nTPM: 39.8
Std nTPM: 41.1
Median nTPM: 83.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 270.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 230.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 211.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 208.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 196.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 192.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 189.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 188.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 174.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 173.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 172.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.4
FF:10158-103A5 76 years, female 35.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.6
Samples: 4

Max nTPM: 53.5
Min nTPM: 32.6
Sample A Female 53.5
Sample B Female 37.5
Sample C Male 50.9
Sample D Male 32.6
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 54.7
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 47.5
Sample C Male 41.5
Sample D Male 54.7
Periaqueductal gray
nTPM: 44.2
Samples: 3

Max nTPM: 51.5
Min nTPM: 36.1
Sample B Female 44.9
Sample C Male 51.5
Sample D Male 36.1
Superior colliculi
nTPM: 41.1
Samples: 4

Max nTPM: 49.2
Min nTPM: 31.2
Sample A Female 49.2
Sample B Female 31.2
Sample C Male 39.1
Sample D Male 44.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 149.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 149.9
Samples: 4

Max nTPM: 156.9
Min nTPM: 142.1
Sample A Male 156.9
Sample B Male 142.1
Sample C Female 144.6
Sample D Female 156.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
75144617 Antisense, RP_051206_01_E08, Mouse strain C57BL/6J (56 days, male) 7.6
74277663 Antisense, RP_051206_01_E08, Mouse strain C57BL/6J (56 days, male) 5.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo