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  • PCDHGC3
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:360.0 nTPM
HPA Brain:213.8 nTPM
GTEx:360.0 nTPM
FANTOM5:291.1 Scaled Tags Per Million
Mouse:53.4 nTPM
Allen mouse:12.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.8
Sample id Sample description nTPM
Amygdala
nTPM: 213.8
2695 Female, age 67, right hemisphere 323.9
2514 Male, age 75, right hemisphere 212.7
2517 Female, age 94, left hemisphere 193.7
2814 Male, age 76, right hemisphere 170.5
1987 Female, age 91, left hemisphere 168.1
Basal amygdala
nTPM: 192.0
2609 Male, age 75, right hemisphere 307.9
2243 Female, age 91, right hemisphere 216.8
2827 Female, age 67, right hemisphere 174.7
2110 Male, age 80, left hemisphere 156.1
1955 Male, age 76, both hemispheres 154.7
2685 Female, age 94, left hemisphere 141.9
Central amygdala
nTPM: 201.4
2515 Male, age 75, right hemisphere 258.6
2239 Male, age 80, left hemisphere 202.5
2826 Female, age 94, left hemisphere 200.4
2701 Female, age 91, right hemisphere 188.4
1905 Male, age 76, both hemispheres 157.4
Corticomedial amygdala
nTPM: 189.3
2428 Male, age 75, right hemisphere 244.8
2829 Male, age 80, left hemisphere 210.2
2242 Female, age 91, right hemisphere 202.3
2535 Female, age 67, right hemisphere 170.3
2429 Female, age 94, left hemisphere 168.1
2240 Male, age 76, both hemispheres 140.2
Lateral amygdala
nTPM: 200.3
2516 Male, age 75, right hemisphere 285.7
2256 Male, age 80, left hemisphere 218.5
2830 Female, age 67, right hemisphere 192.3
2534 Female, age 94, left hemisphere 179.1
2255 Female, age 91, right hemisphere 178.5
1883 Male, age 76, both hemispheres 147.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

360.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 360.0
Samples: 181

Max nTPM: 700.7
Min nTPM: 110.8
Std nTPM: 106.6
Median nTPM: 341.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 700.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 694.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 678.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 663.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 648.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 592.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 589.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 586.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 579.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 547.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 542.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 542.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 538.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 532.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 531.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 531.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 523.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 521.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 519.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 509.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 501.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 498.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 497.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 493.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 489.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 474.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 472.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 471.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 459.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 451.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 449.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 439.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 437.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 434.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 434.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 432.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 430.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 428.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 427.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 425.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 425.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 423.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 419.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 418.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 412.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 411.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 410.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 409.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 405.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 405.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 403.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 402.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 402.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 401.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 399.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 396.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 390.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 387.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 386.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 386.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 385.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 385.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 384.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 382.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 378.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 376.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 376.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 376.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 373.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 370.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 368.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 367.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 364.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 363.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 362.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 362.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 361.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 360.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 359.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 355.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 349.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 349.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 345.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 344.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 344.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 344.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 343.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 342.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 341.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 341.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 341.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 337.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 337.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 335.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 335.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 333.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 329.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 329.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 328.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 327.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 326.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 325.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 325.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 324.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 323.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 323.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 323.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 320.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 320.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 320.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 319.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 319.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 318.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 318.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 317.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 314.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 313.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 310.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 310.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 309.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 308.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 307.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 307.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 306.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 304.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 303.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 303.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 300.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 299.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 298.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 296.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 293.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 292.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 291.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 290.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 289.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 289.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 286.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 284.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 284.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 282.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 281.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 276.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 276.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 275.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 274.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 273.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 273.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 268.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 267.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 259.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 259.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 259.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 258.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 257.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 257.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 257.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 254.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 253.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 253.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 250.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 249.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 247.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 244.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 242.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 238.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 236.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 236.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 234.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 229.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 225.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 224.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 208.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 207.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 191.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 188.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 185.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 183.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 181.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 176.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

291.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 291.1
FF:10151-102I7 76 years, female 291.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 53.4
Samples: 4

Max nTPM: 60.1
Min nTPM: 48.9
Sample A Male 53.4
Sample B Male 48.9
Sample C Female 60.1
Sample D Female 51.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.8
771 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 23.6
770 Antisense, RP_Baylor_103306, Mouse strain C57BL/6J (56 days, male) 15.3
70784952 Antisense, RP_050706_01_E08, Mouse strain C57BL/6J (56 days, male) 1.9

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