MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:184.5 nTPM
HPA Brain:375.4 nTPM
GTEx:184.5 nTPM
FANTOM5:137.4 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:0.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 375.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 222.8
2586 Male, age 75, left hemisphere 394.9
2666 Male, age 74, left hemisphere 352.7
2828 Female, age 72, unknown 347.8
1870 Female, age 42, unknown 249.7
2411 Female, age 72, unknown 223.3
1827 Male, age 72, unknown 196.0
1830 Male, age 51, unknown 182.6
1833 Male, age 53, unknown 152.1
2219 Male, age 76, both hemispheres 102.2
2019 Male, age 18, unknown 26.3
Dorsal raphe nucleus
nTPM: 293.6
2298 Female, age 72, unknown 372.3
2047 Male, age 72, unknown 367.0
2016 Female, age 72, unknown 266.9
2750 Male, age 76, both hemispheres 239.4
1828 Male, age 53, unknown 222.6
Inferior colliculus
nTPM: 90.7
1890 Male, age 53, unknown 111.2
1848 Female, age 42, unknown 92.5
2849 Male, age 72, unknown 83.1
2097 Female, age 72, unknown 76.0
Median raphe nucleus
nTPM: 151.2
2220 Male, age 76, midline 151.2
Periaquaductal grey, anterior
nTPM: 375.4
1947 Male, age 18, unknown 589.9
1795 Male, age 51, unknown 376.0
2502 Female, age 75, unknown 160.3
Periaquaductal grey, dorsal
nTPM: 243.1
1840 Male, age 53, unknown 286.6
1831 Male, age 72, unknown 263.2
2850 Male, age 76, both hemispheres 255.7
2464 Female, age 72, unknown 167.1
Periaquaductal grey, lateral
nTPM: 374.8
2053 Male, age 18, unknown 684.7
2140 Male, age 76, both hemispheres 227.5
2272 Male, age 74, both hemispheres 212.2
Pretectal area
nTPM: 187.4
2825 Male, age 18, unknown 380.0
2273 Male, age 74, both hemispheres 277.0
2667 Female, age 75, unknown 241.0
2407 Male, age 75, both hemispheres 231.2
2224 Female, age 72, unknown 223.3
2316 Male, age 76, right hemisphere 193.7
1815 Male, age 53, unknown 169.0
1944 Female, age 72, unknown 127.4
2007 Male, age 72, unknown 74.5
1817 Female, age 42, unknown 73.1
1816 Male, age 51, unknown 70.8
Red nucleus
nTPM: 145.9
2725 Female, age 75, unknown 334.5
2584 Male, age 75, left hemisphere 248.2
2823 Male, age 76, right hemisphere 192.6
2503 Female, age 72, unknown 171.3
1865 Male, age 51, unknown 146.4
2769 Male, age 72, unknown 121.0
2227 Male, age 72, unknown 120.3
1821 Female, age 72, unknown 108.6
1954 Female, age 42, unknown 95.9
1904 Male, age 53, unknown 91.3
2588 Male, age 74, left hemisphere 75.4
2785 Male, age 18, unknown 45.4
Substantia nigra
nTPM: 296.5
2699 Male, age 18, unknown 541.5
1851 Male, age 51, unknown 389.6
2409 Female, age 72, unknown 333.2
1916 Female, age 42, unknown 307.2
2590 Female, age 75, unknown 289.2
2583 Male, age 75, right hemisphere 274.1
1941 Male, age 53, unknown 244.7
2241 Male, age 72, unknown 232.5
2665 Male, age 74, both hemispheres 209.1
1889 Female, age 72, unknown 143.8
Superior colliculus
nTPM: 234.1
1913 Female, age 42, unknown 461.2
1995 Male, age 72, unknown 429.4
2664 Male, age 75, both hemispheres 273.5
1796 Male, age 53, unknown 273.3
2261 Male, age 18, unknown 222.8
2587 Male, age 74, left hemisphere 175.8
1839 Male, age 51, unknown 163.6
2087 Female, age 72, unknown 148.2
2668 Female, age 75, unknown 105.1
1895 Male, age 76, right hemisphere 88.5
Ventral tegmental area
nTPM: 292.1
1942 Male, age 51, unknown 443.9
2021 Male, age 53, unknown 339.1
1915 Female, age 42, unknown 278.0
2410 Female, age 72, unknown 256.1
2223 Female, age 72, unknown 220.0
2218 Male, age 76, both hemispheres 215.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 184.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.5
Samples: 183

Max nTPM: 1370.0
Min nTPM: 5.9
Std nTPM: 181.0
Median nTPM: 139.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1370.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1141.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1095.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 724.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 669.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 582.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 484.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 474.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 464.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 459.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 454.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.4
FF:10158-103A5 76 years, female 137.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.9
Samples: 4

Max nTPM: 5.9
Min nTPM: 1.7
Sample A Female 2.1
Sample B Female 5.9
Sample C Male 1.7
Sample D Male 2.0
Midbrain
nTPM: 1.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 0.3
Sample A Female 1.1
Sample B Female 2.5
Sample C Male 0.9
Sample D Male 0.3
Periaqueductal gray
nTPM: 0.7
Samples: 3

Max nTPM: 1.3
Min nTPM: 0.1
Sample B Female 1.3
Sample C Male 0.1
Sample D Male 0.6
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 39.4
Min nTPM: 0.4
Sample A Female 1.2
Sample B Female 39.4
Sample C Male 0.4
Sample D Male 0.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.4
Sample B Male 0.2
Sample C Female 0.1
Sample D Female 0.3

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