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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MIF
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:646.0 nTPM
FANTOM5:568.6 Scaled Tags Per Million
Pig:539.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003868Antibody CAB005284
Glial cells LowNot detected
Neuronal cells LowLow




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

646.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 646.0
Samples: 300

Max nTPM: 1461.1
Min nTPM: 202.2
Std nTPM: 209.1
Median nTPM: 613.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1461.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1283.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1278.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1261.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1256.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1237.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1233.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1182.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1153.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1127.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1093.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1089.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1072.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1052.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1046.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1044.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1019.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1011.2
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1002.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 992.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 984.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 983.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 974.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 963.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 960.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 959.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 948.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 947.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 934.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 926.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 925.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 909.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 909.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 884.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 880.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 878.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 874.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 873.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 871.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 863.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 861.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 850.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 850.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 849.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 849.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 847.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 847.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 841.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 840.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 836.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 835.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 830.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 829.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 827.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 824.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 824.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 820.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 819.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 809.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 806.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 803.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 803.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 796.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 793.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 791.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 790.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 789.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 782.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 780.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 779.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 776.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 771.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 764.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 756.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 754.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 753.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 750.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 750.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 748.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 747.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 745.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 744.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 742.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 738.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 735.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 734.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 730.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 729.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 726.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 723.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 722.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 712.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 711.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 710.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 709.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 707.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 700.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 700.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 699.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 699.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 694.4
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 694.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 690.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 690.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 690.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 688.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 688.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 687.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 683.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 682.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 682.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 679.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 678.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 678.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 676.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 675.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 672.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 668.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 668.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 665.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 664.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 661.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 661.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 656.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 655.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 653.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 648.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 647.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 645.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 644.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 643.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 642.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 641.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 637.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 636.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 634.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 634.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 633.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 626.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 623.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 623.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 623.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 622.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 621.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 620.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 616.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 615.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 615.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 614.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 614.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 613.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 611.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 610.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 610.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 608.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 606.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 605.5
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 604.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 603.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 601.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 600.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 600.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 596.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 590.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 589.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 588.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 588.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 588.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 585.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 584.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 583.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 582.3
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 581.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 580.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 579.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 578.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 578.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 577.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 577.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 575.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 574.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 574.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 570.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 567.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 566.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 565.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 565.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 565.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 563.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 562.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 561.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 557.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 557.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 556.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 554.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 552.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 552.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 551.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 550.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 548.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 547.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 546.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 544.1
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 542.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 539.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 538.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 537.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 537.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 536.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 535.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 532.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 532.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 532.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 531.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 529.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 529.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 523.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 523.8
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 521.7
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 517.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 516.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 515.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 515.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 513.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 513.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 507.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 506.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 504.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 504.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 502.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 502.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 498.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 495.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 494.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 484.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 483.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 481.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 480.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 480.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 475.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 474.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 474.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 468.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 461.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 458.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 454.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 453.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 450.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 450.9
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 450.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 450.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 449.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 448.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 448.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 447.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 446.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 445.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 444.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 441.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 440.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 439.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 436.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 429.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 424.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 420.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 409.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 406.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 404.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 403.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 400.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 393.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 391.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 389.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 388.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 386.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 380.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 379.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 379.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 374.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 373.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 372.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 371.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 370.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 368.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 368.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 359.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 352.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 350.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 341.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 325.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 323.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 323.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 320.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 309.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 289.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 280.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 279.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 275.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 204.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 202.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

568.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 568.6
FF:10164-103B2 76 years, female 568.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

539.8
Pig sample Sample description nTPM
Caudate
nTPM: 539.8
Samples: 4

Max nTPM: 674.2
Min nTPM: 446.9
Sample A Female 446.9
Sample B Female 575.0
Sample C Male 674.2
Sample D Male 463.2

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