We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ARPC1A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • ARPC1A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:55.2 nTPM
HPA Brain:63.6 nTPM
GTEx:55.2 nTPM
FANTOM5:81.8 Scaled Tags Per Million
Pig:93.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 56.4
1981 Female, age 72, midline 69.5
2565 Male, age 75, midline 60.9
2194 Female, age 79, both hemispheres 58.4
2048 Male, age 55, midline 46.8
2816 Male, age 47, midline 46.2
Cervical spinal cord, dorsal horn
nTPM: 63.6
2173 Female, age 72, unknown 77.1
2069 Male, age 47, both hemispheres 69.7
2296 Male, age 66, both hemispheres 66.6
2297 Male, age 75, both hemispheres 63.0
1877 Male, age 55, unknown 54.0
2721 Male, age 90, both hemispheres 51.2
Cervical spinal cord, ventral horn
nTPM: 60.6
2480 Male, age 75, both hemispheres 68.4
2068 Male, age 55, unknown 65.8
2809 Male, age 90, both hemispheres 58.2
2295 Male, age 66, both hemispheres 57.9
2820 Female, age 79, both hemispheres 57.5
2098 Female, age 72, unknown 55.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.2
Samples: 204

Max nTPM: 75.1
Min nTPM: 34.6
Std nTPM: 7.5
Median nTPM: 54.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 75.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 74.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 74.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 73.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 71.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 71.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 71.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 70.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 69.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 69.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 67.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 66.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 66.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 66.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 65.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 65.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 65.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 65.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 65.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 64.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 64.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 64.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 64.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 64.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 64.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 64.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 64.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 64.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 63.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 63.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 63.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 63.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 63.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 63.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 62.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 62.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 62.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 62.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 62.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 62.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 62.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 62.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 62.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 61.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 61.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 61.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 61.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 61.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 61.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 60.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 60.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 60.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 60.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 60.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 60.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 60.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 60.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 59.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 59.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 59.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 59.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 58.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 58.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 57.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 57.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 57.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 57.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 57.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 57.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 57.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 57.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 57.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 56.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 56.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 56.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 56.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 56.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 56.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 56.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 56.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 56.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 56.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 56.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 56.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 56.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 56.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 56.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 55.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 55.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 55.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 55.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 55.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 55.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 55.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 55.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 55.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 55.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 54.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 54.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 54.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 54.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 54.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 54.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 54.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 54.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 54.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 54.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 54.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 54.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 54.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 53.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 53.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 53.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 53.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 53.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 53.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 53.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 53.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 53.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 53.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 52.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 52.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 52.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 52.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 52.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 52.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 52.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 52.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 52.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 52.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 51.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 51.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 51.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 51.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 51.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 51.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 51.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 51.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 50.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 50.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 50.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 50.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 50.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 50.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 50.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 50.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 50.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 50.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 49.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 49.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 49.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 49.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 49.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 49.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 49.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 49.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 49.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 49.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 49.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 49.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 49.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 49.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 48.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 48.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 48.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 48.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 48.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 48.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 48.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 47.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 47.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 47.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 47.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 47.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 47.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 47.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 47.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 46.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 46.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 45.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 45.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 45.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 45.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 45.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 45.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 45.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 44.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 44.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 44.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 44.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 44.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 44.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 44.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 43.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 43.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 43.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 42.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 42.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 40.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 39.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 39.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 34.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 81.8
FF:10181-103D1 60 years, female 103.1
FF:10159-103A6 76 years, female 60.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 79.6
Samples: 4

Max nTPM: 83.0
Min nTPM: 74.1
Sample A Female 83.0
Sample B Female 74.1
Sample C Male 79.2
Sample D Male 82.2
Ventral spinal cord
nTPM: 93.6
Samples: 4

Max nTPM: 94.6
Min nTPM: 91.8
Sample A Female 93.5
Sample B Female 94.4
Sample C Male 94.6
Sample D Male 91.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo