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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
62.2
nTPM
HPA Brain:
72.8
nTPM
GTEx:
62.2
nTPM
FANTOM5:
100.6
Scaled Tags Per Million
Mouse:
103.9
nTPM
Allen mouse:
6.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 58.9
2586
Male, age 75, left hemisphere
77.4
2219
Male, age 76, both hemispheres
61.4
1827
Male, age 72, unknown
59.9
1870
Female, age 42, unknown
57.2
1833
Male, age 53, unknown
57.1
2411
Female, age 72, unknown
56.9
2019
Male, age 18, unknown
55.9
2828
Female, age 72, unknown
55.4
2666
Male, age 74, left hemisphere
55.3
1830
Male, age 51, unknown
52.5
Dorsal raphe nucleus nTPM: 59.0
2298
Female, age 72, unknown
68.7
1828
Male, age 53, unknown
62.2
2047
Male, age 72, unknown
60.3
2750
Male, age 76, both hemispheres
56.1
2016
Female, age 72, unknown
47.5
Inferior colliculus nTPM: 51.3
2849
Male, age 72, unknown
60.7
1890
Male, age 53, unknown
48.5
1848
Female, age 42, unknown
48.4
2097
Female, age 72, unknown
47.6
Median raphe nucleus nTPM: 72.8
2220
Male, age 76, midline
72.8
Periaquaductal grey, anterior nTPM: 63.6
2502
Female, age 75, unknown
67.6
1795
Male, age 51, unknown
65.3
1947
Male, age 18, unknown
58.0
Periaquaductal grey, dorsal nTPM: 59.2
2850
Male, age 76, both hemispheres
79.6
1840
Male, age 53, unknown
53.4
1831
Male, age 72, unknown
52.0
2464
Female, age 72, unknown
51.8
Periaquaductal grey, lateral nTPM: 59.6
2140
Male, age 76, both hemispheres
64.3
2272
Male, age 74, both hemispheres
62.6
2053
Male, age 18, unknown
52.0
Pretectal area nTPM: 62.9
1816
Male, age 51, unknown
74.2
2007
Male, age 72, unknown
71.6
1817
Female, age 42, unknown
69.9
1815
Male, age 53, unknown
67.0
2224
Female, age 72, unknown
65.0
2667
Female, age 75, unknown
64.3
1944
Female, age 72, unknown
64.1
2273
Male, age 74, both hemispheres
63.5
2407
Male, age 75, both hemispheres
54.8
2825
Male, age 18, unknown
54.3
2316
Male, age 76, right hemisphere
43.1
Red nucleus nTPM: 54.6
2725
Female, age 75, unknown
66.2
2785
Male, age 18, unknown
61.1
1821
Female, age 72, unknown
54.9
1865
Male, age 51, unknown
54.9
2503
Female, age 72, unknown
54.6
1904
Male, age 53, unknown
53.7
1954
Female, age 42, unknown
53.5
2227
Male, age 72, unknown
52.7
2588
Male, age 74, left hemisphere
52.2
2769
Male, age 72, unknown
52.0
2823
Male, age 76, right hemisphere
51.9
2584
Male, age 75, left hemisphere
47.3
Substantia nigra nTPM: 59.8
1916
Female, age 42, unknown
85.3
2699
Male, age 18, unknown
71.3
1851
Male, age 51, unknown
67.4
1941
Male, age 53, unknown
63.0
1889
Female, age 72, unknown
60.5
2409
Female, age 72, unknown
55.6
2241
Male, age 72, unknown
53.5
2665
Male, age 74, both hemispheres
49.0
2583
Male, age 75, right hemisphere
46.9
2590
Female, age 75, unknown
45.2
Superior colliculus nTPM: 56.7
2664
Male, age 75, both hemispheres
70.2
1796
Male, age 53, unknown
64.4
2261
Male, age 18, unknown
61.9
2587
Male, age 74, left hemisphere
58.7
1913
Female, age 42, unknown
56.6
2087
Female, age 72, unknown
55.6
2668
Female, age 75, unknown
54.4
1995
Male, age 72, unknown
51.7
1839
Male, age 51, unknown
48.3
1895
Male, age 76, right hemisphere
45.2
Ventral tegmental area nTPM: 62.5
2218
Male, age 76, both hemispheres
74.4
1915
Female, age 42, unknown
66.0
2410
Female, age 72, unknown
63.8
2223
Female, age 72, unknown
61.1
1942
Male, age 51, unknown
56.8
2021
Male, age 53, unknown
52.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 62.2
Samples: 139
Max nTPM: 104.7
Min nTPM: 27.1
Std nTPM: 14.2
Median nTPM: 60.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
104.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
99.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
96.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
93.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
92.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
88.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
85.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
85.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
84.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
83.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
82.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
82.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
82.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
81.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
81.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
81.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
80.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
79.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
79.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
79.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
79.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
78.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
77.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
77.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
76.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
75.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
75.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
74.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
74.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
73.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
73.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
73.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
72.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
72.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
72.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
72.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
71.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
71.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
71.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
70.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
70.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
69.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
68.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
67.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
67.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
67.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
66.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
66.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
66.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
66.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
65.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
65.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
64.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
64.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
64.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
64.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
64.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
64.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
63.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
62.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
62.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
62.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
62.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
61.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
61.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
61.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
60.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
60.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
60.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
60.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
59.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
59.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
59.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
59.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
59.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
59.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
59.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
59.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
59.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
59.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
58.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
58.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
57.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
57.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
57.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
57.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
56.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
56.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
56.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
55.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
55.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
55.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
54.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
54.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
54.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
53.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
53.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
52.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
52.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
52.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
52.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
51.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
51.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
51.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
51.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
50.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
50.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
50.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
50.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
50.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
50.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
50.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
50.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
50.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
49.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
49.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
49.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
48.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
48.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
47.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
47.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
46.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
46.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
46.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
46.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
46.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
44.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
43.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
42.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
41.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
41.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
41.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
40.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
40.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
39.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
38.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
37.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
34.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
27.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
103.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 103.9
Samples: 4
Max nTPM: 109.8
Min nTPM: 100.6
Sample A
Male
101.5
Sample B
Male
100.6
Sample C
Female
109.8
Sample D
Female
103.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.