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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:30.7 nTPM
HPA Brain:246.6 nTPM
GTEx:30.7 nTPM
FANTOM5:1.7 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.6
Sample id Sample description nTPM
Amygdala
nTPM: 163.7
2517 Female, age 94, left hemisphere 193.1
2514 Male, age 75, right hemisphere 169.4
2695 Female, age 67, right hemisphere 165.3
1987 Female, age 91, left hemisphere 152.7
2814 Male, age 76, right hemisphere 137.9
Basal amygdala
nTPM: 220.9
2827 Female, age 67, right hemisphere 321.2
2243 Female, age 91, right hemisphere 224.2
2685 Female, age 94, left hemisphere 209.0
1955 Male, age 76, both hemispheres 196.4
2110 Male, age 80, left hemisphere 191.2
2609 Male, age 75, right hemisphere 183.4
Central amygdala
nTPM: 203.3
2826 Female, age 94, left hemisphere 260.6
2701 Female, age 91, right hemisphere 211.9
2239 Male, age 80, left hemisphere 202.8
1905 Male, age 76, both hemispheres 174.5
2515 Male, age 75, right hemisphere 167.0
Corticomedial amygdala
nTPM: 215.4
2535 Female, age 67, right hemisphere 253.8
2242 Female, age 91, right hemisphere 222.1
2240 Male, age 76, both hemispheres 217.7
2429 Female, age 94, left hemisphere 208.7
2829 Male, age 80, left hemisphere 201.7
2428 Male, age 75, right hemisphere 188.4
Lateral amygdala
nTPM: 246.6
2830 Female, age 67, right hemisphere 464.2
2255 Female, age 91, right hemisphere 222.5
2534 Female, age 94, left hemisphere 212.7
2256 Male, age 80, left hemisphere 211.1
2516 Male, age 75, right hemisphere 203.8
1883 Male, age 76, both hemispheres 165.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 30.7
Samples: 181

Max nTPM: 64.5
Min nTPM: 1.0
Std nTPM: 13.3
Median nTPM: 30.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 62.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 62.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 60.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 55.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 54.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 52.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 51.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 51.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 50.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 50.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 49.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 49.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 48.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 48.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 48.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 48.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 47.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 47.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 46.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 46.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 46.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 46.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 46.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 46.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 45.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 45.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 45.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 45.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 44.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 44.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 44.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 43.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 43.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 41.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 41.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 41.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 41.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 41.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 40.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 40.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 40.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 39.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 39.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 39.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 38.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 38.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 38.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 37.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 37.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 37.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 36.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 36.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 36.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 36.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 36.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 36.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 35.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 35.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 35.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 35.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 35.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 35.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 34.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 34.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 34.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 34.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 34.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 34.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 33.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 33.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 33.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 33.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 33.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 33.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 32.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 32.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 32.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 32.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 31.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 31.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 31.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 31.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 31.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 31.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 31.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 31.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 30.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 30.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 30.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 29.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 29.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 29.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 29.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 29.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 29.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 29.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 29.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 28.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 28.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 28.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 28.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 28.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 28.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 28.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 27.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 27.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 27.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 27.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 27.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 27.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 26.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 26.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 26.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 26.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 26.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 26.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 26.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 26.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 25.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 25.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 25.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 25.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 25.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 25.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 24.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 24.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 24.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 24.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 23.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 23.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 22.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 22.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 22.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 22.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 22.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 22.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 21.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 21.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 20.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 20.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 20.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 20.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 20.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 20.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 20.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 19.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 19.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 18.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 17.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 17.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 16.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 16.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 15.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 15.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 15.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 14.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 14.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 12.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 12.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 11.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 10.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 9.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 9.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 9.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 8.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 8.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 5.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1.7
FF:10151-102I7 76 years, female 1.7

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