MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.4 nTPM
HPA Brain:216.9 nTPM
GTEx:34.4 nTPM
FANTOM5:2.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 216.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 179.8
2666 Male, age 74, left hemisphere 239.3
2219 Male, age 76, both hemispheres 209.1
1830 Male, age 51, unknown 201.2
2019 Male, age 18, unknown 184.8
1833 Male, age 53, unknown 183.9
2828 Female, age 72, unknown 180.5
1827 Male, age 72, unknown 165.5
2411 Female, age 72, unknown 164.8
1870 Female, age 42, unknown 143.0
2586 Male, age 75, left hemisphere 126.1
Dorsal raphe nucleus
nTPM: 168.2
2047 Male, age 72, unknown 198.0
2750 Male, age 76, both hemispheres 186.4
2016 Female, age 72, unknown 170.9
1828 Male, age 53, unknown 155.1
2298 Female, age 72, unknown 130.4
Inferior colliculus
nTPM: 165.3
1890 Male, age 53, unknown 181.4
2849 Male, age 72, unknown 166.2
1848 Female, age 42, unknown 163.4
2097 Female, age 72, unknown 150.2
Median raphe nucleus
nTPM: 216.9
2220 Male, age 76, midline 216.9
Periaquaductal grey, anterior
nTPM: 153.0
1947 Male, age 18, unknown 171.7
1795 Male, age 51, unknown 151.5
2502 Female, age 75, unknown 135.7
Periaquaductal grey, dorsal
nTPM: 168.2
2464 Female, age 72, unknown 190.8
2850 Male, age 76, both hemispheres 172.5
1831 Male, age 72, unknown 165.2
1840 Male, age 53, unknown 144.3
Periaquaductal grey, lateral
nTPM: 168.6
2140 Male, age 76, both hemispheres 195.6
2272 Male, age 74, both hemispheres 157.2
2053 Male, age 18, unknown 153.0
Pretectal area
nTPM: 161.7
2316 Male, age 76, right hemisphere 227.0
1944 Female, age 72, unknown 175.2
2407 Male, age 75, both hemispheres 167.1
2667 Female, age 75, unknown 166.7
2825 Male, age 18, unknown 159.4
2224 Female, age 72, unknown 158.0
1816 Male, age 51, unknown 152.0
1815 Male, age 53, unknown 150.9
2007 Male, age 72, unknown 149.9
2273 Male, age 74, both hemispheres 140.5
1817 Female, age 42, unknown 132.1
Red nucleus
nTPM: 175.0
2588 Male, age 74, left hemisphere 235.9
2823 Male, age 76, right hemisphere 213.6
2584 Male, age 75, left hemisphere 178.7
1904 Male, age 53, unknown 177.4
1865 Male, age 51, unknown 175.0
2785 Male, age 18, unknown 173.7
1954 Female, age 42, unknown 172.4
2227 Male, age 72, unknown 168.1
2769 Male, age 72, unknown 165.4
2503 Female, age 72, unknown 163.6
2725 Female, age 75, unknown 150.7
1821 Female, age 72, unknown 125.4
Substantia nigra
nTPM: 171.6
2241 Male, age 72, unknown 204.7
1941 Male, age 53, unknown 201.3
2665 Male, age 74, both hemispheres 183.2
2583 Male, age 75, right hemisphere 173.2
2409 Female, age 72, unknown 172.0
2590 Female, age 75, unknown 167.9
1889 Female, age 72, unknown 159.4
2699 Male, age 18, unknown 157.6
1851 Male, age 51, unknown 152.4
1916 Female, age 42, unknown 144.6
Superior colliculus
nTPM: 167.4
2668 Female, age 75, unknown 208.7
2087 Female, age 72, unknown 196.7
1895 Male, age 76, right hemisphere 182.2
1913 Female, age 42, unknown 176.3
2261 Male, age 18, unknown 167.5
2587 Male, age 74, left hemisphere 160.9
1839 Male, age 51, unknown 153.5
1995 Male, age 72, unknown 144.0
1796 Male, age 53, unknown 143.4
2664 Male, age 75, both hemispheres 140.9
Ventral tegmental area
nTPM: 167.4
1942 Male, age 51, unknown 185.6
2021 Male, age 53, unknown 184.1
2223 Female, age 72, unknown 179.9
2218 Male, age 76, both hemispheres 169.4
2410 Female, age 72, unknown 146.9
1915 Female, age 42, unknown 138.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.4
Samples: 183

Max nTPM: 117.6
Min nTPM: 4.3
Std nTPM: 16.2
Median nTPM: 32.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 117.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 89.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 74.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 73.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 68.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 63.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 63.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 62.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 60.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 57.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.5
FF:10158-103A5 76 years, female 2.5

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