MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.7 nTPM
HPA Brain:30.5 nTPM
GTEx:40.7 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:21.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.7
2019 Male, age 18, unknown 32.3
2411 Female, age 72, unknown 30.0
2586 Male, age 75, left hemisphere 28.6
2828 Female, age 72, unknown 26.5
2219 Male, age 76, both hemispheres 26.1
1827 Male, age 72, unknown 25.0
1870 Female, age 42, unknown 24.2
2666 Male, age 74, left hemisphere 23.2
1833 Male, age 53, unknown 21.1
1830 Male, age 51, unknown 20.2
Dorsal raphe nucleus
nTPM: 27.6
2298 Female, age 72, unknown 33.7
2750 Male, age 76, both hemispheres 31.4
1828 Male, age 53, unknown 26.6
2047 Male, age 72, unknown 26.5
2016 Female, age 72, unknown 19.6
Inferior colliculus
nTPM: 22.0
2097 Female, age 72, unknown 29.9
1890 Male, age 53, unknown 25.5
1848 Female, age 42, unknown 17.6
2849 Male, age 72, unknown 15.2
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Periaquaductal grey, anterior
nTPM: 24.0
2502 Female, age 75, unknown 25.9
1947 Male, age 18, unknown 23.2
1795 Male, age 51, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 19.5
1831 Male, age 72, unknown 20.8
2464 Female, age 72, unknown 20.6
2850 Male, age 76, both hemispheres 19.3
1840 Male, age 53, unknown 17.3
Periaquaductal grey, lateral
nTPM: 18.1
2272 Male, age 74, both hemispheres 19.2
2053 Male, age 18, unknown 18.0
2140 Male, age 76, both hemispheres 17.1
Pretectal area
nTPM: 26.6
2007 Male, age 72, unknown 38.4
1816 Male, age 51, unknown 34.8
1817 Female, age 42, unknown 31.9
1944 Female, age 72, unknown 31.0
1815 Male, age 53, unknown 28.4
2667 Female, age 75, unknown 24.8
2273 Male, age 74, both hemispheres 23.3
2224 Female, age 72, unknown 22.5
2825 Male, age 18, unknown 19.8
2407 Male, age 75, both hemispheres 19.5
2316 Male, age 76, right hemisphere 18.1
Red nucleus
nTPM: 28.4
1821 Female, age 72, unknown 33.5
1904 Male, age 53, unknown 32.1
2227 Male, age 72, unknown 30.3
2588 Male, age 74, left hemisphere 29.9
1865 Male, age 51, unknown 28.7
2769 Male, age 72, unknown 28.4
2785 Male, age 18, unknown 28.1
2725 Female, age 75, unknown 27.4
2823 Male, age 76, right hemisphere 26.7
2503 Female, age 72, unknown 25.8
1954 Female, age 42, unknown 25.2
2584 Male, age 75, left hemisphere 25.1
Substantia nigra
nTPM: 30.5
1916 Female, age 42, unknown 44.9
1851 Male, age 51, unknown 41.6
1941 Male, age 53, unknown 33.0
1889 Female, age 72, unknown 31.6
2665 Male, age 74, both hemispheres 31.4
2241 Male, age 72, unknown 27.9
2583 Male, age 75, right hemisphere 26.9
2590 Female, age 75, unknown 26.2
2699 Male, age 18, unknown 26.0
2409 Female, age 72, unknown 15.3
Superior colliculus
nTPM: 25.4
2587 Male, age 74, left hemisphere 31.1
2261 Male, age 18, unknown 30.4
2087 Female, age 72, unknown 29.0
2668 Female, age 75, unknown 28.0
1796 Male, age 53, unknown 25.8
2664 Male, age 75, both hemispheres 24.6
1913 Female, age 42, unknown 24.5
1995 Male, age 72, unknown 22.5
1895 Male, age 76, right hemisphere 19.7
1839 Male, age 51, unknown 18.7
Ventral tegmental area
nTPM: 27.6
2410 Female, age 72, unknown 31.4
2218 Male, age 76, both hemispheres 30.1
1915 Female, age 42, unknown 30.0
2223 Female, age 72, unknown 27.2
1942 Male, age 51, unknown 25.2
2021 Male, age 53, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.7
Samples: 183

Max nTPM: 79.8
Min nTPM: 16.6
Std nTPM: 12.0
Median nTPM: 39.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 79.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 73.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 72.9
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 72.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 70.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 69.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 68.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 67.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 66.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 62.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.3
Samples: 4

Max nTPM: 37.8
Min nTPM: 26.1
Sample A Female 37.8
Sample B Female 35.3
Sample C Male 26.1
Sample D Male 30.1
Midbrain
nTPM: 37.9
Samples: 4

Max nTPM: 44.1
Min nTPM: 32.9
Sample A Female 44.1
Sample B Female 38.1
Sample C Male 32.9
Sample D Male 36.5
Periaqueductal gray
nTPM: 30.7
Samples: 3

Max nTPM: 32.0
Min nTPM: 28.3
Sample B Female 31.9
Sample C Male 28.3
Sample D Male 32.0
Superior colliculi
nTPM: 40.3
Samples: 4

Max nTPM: 49.5
Min nTPM: 30.0
Sample A Female 42.7
Sample B Female 49.5
Sample C Male 30.0
Sample D Male 38.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.0
Sample A Male 21.5
Sample B Male 19.0
Sample C Female 21.2
Sample D Female 24.2

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