HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:1.6 nTPM
HPA Brain:7.1 nTPM
GTEx:1.6 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:7.9 nTPM
Mouse:3.8 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035589Antibody HPA035590
Glial cells Not detectedNot detected
Neuronal cells Not detectedHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 7.1
Sample id Sample description nTPM
Hippocampus
nTPM: 6.2
1911 Female, age 85, right hemisphere 6.6
1898 Male, age 80, left hemisphere 6.3
2148 Female, age 91, left hemisphere 6.3
1855 Male, age 76, left hemisphere 6.2
2621 Female, age 67, right hemisphere 6.1
2529 Female, age 94, left hemisphere 5.5
Dentate gyrus
nTPM: 6.5
1927 Female, age 91, both hemispheres 7.2
2530 Female, age 94, left hemisphere 7.0
2528 Male, age 74, both hemispheres 6.9
2010 Male, age 76, both hemispheres 6.4
2531 Female, age 67, both hemispheres 6.0
2246 Female, age 85, both hemispheres 5.7
Entorhinal gyrus
nTPM: 6.7
2117 Female, age 91, right hemisphere 7.5
2613 Female, age 94, left hemisphere 6.9
1787 Male, age 76, left hemisphere 6.6
2764 Male, age 80, right hemisphere 6.6
1938 Female, age 85, left hemisphere 6.2
2686 Male, age 75, right hemisphere 6.2
Hippocampus, CA1
nTPM: 7.1
2045 Male, age 76, both hemispheres 9.7
2749 Male, age 80, left hemisphere 7.6
2082 Female, age 91, right hemisphere 6.5
1873 Female, age 85, both hemispheres 5.9
2527 Male, age 74, both hemispheres 5.6
Hippocampus, CA2
nTPM: 6.6
2249 Male, age 74, both hemispheres 7.3
1963 Male, age 80, left hemisphere 7.1
1892 Male, age 76, both hemispheres 6.8
1940 Female, age 85, left hemisphere 6.4
2437 Female, age 94, left hemisphere 6.2
2113 Female, age 91, right hemisphere 6.0
Hippocampus, CA3
nTPM: 6.4
1891 Female, age 85, both hemispheres 6.9
1867 Male, age 76, both hemispheres 6.7
2620 Female, age 94, left hemisphere 6.6
2436 Male, age 74, both hemispheres 6.4
2137 Male, age 80, left hemisphere 6.3
2861 Female, age 67, both hemispheres 5.6
Parahippocampal cortex
nTPM: 6.3
2018 Male, age 76, both hemispheres 7.0
1933 Female, age 85, both hemispheres 6.8
1990 Female, age 91, right hemisphere 6.7
2532 Female, age 72, left hemisphere 6.7
2250 Female, age 67, right hemisphere 6.5
2245 Female, age 91, both hemispheres 6.4
1850 Male, age 80, both hemispheres 6.2
2693 Female, age 94, both hemispheres 6.2
2692 Male, age 74, both hemispheres 5.5
2622 Female, age 67, right hemisphere 5.3
Perirhinal gyrus
nTPM: 6.7
2848 Male, age 76, right hemisphere 7.8
1841 Female, age 85, right hemisphere 6.6
1794 Male, age 80, right hemisphere 6.5
1847 Female, age 91, left hemisphere 6.5
2521 Female, age 94, right hemisphere 5.9
Subiculum
nTPM: 6.0
1977 Female, age 85, both hemispheres 7.2
1901 Male, age 80, both hemispheres 6.4
2042 Male, age 76, both hemispheres 5.9
2438 Female, age 94, left hemisphere 5.8
2729 Female, age 91, right hemisphere 5.7
2619 Male, age 74, both hemispheres 5.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 1.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1.6
Samples: 255

Max nTPM: 6.5
Min nTPM: 0.5
Std nTPM: 0.5
Median nTPM: 1.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 6.5
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 3.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 3.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 2.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 2.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 2.5
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 2.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 2.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 2.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 2.4
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 2.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.7
FF:10153-102I9 76 years, female 14.9
FF:10169-103B7 60 years, female 12.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 7.9
Pig sample Sample description nTPM
Subiculum
nTPM: 7.9
Samples: 4

Max nTPM: 9.0
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 8.3
Sample C Male 9.0
Sample D Male 8.1
Dorsal hippocampus
nTPM: 7.3
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 6.8
Sample C Male 8.9
Sample D Male 6.8
Entorhinal cortex
nTPM: 6.0
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.6
Sample A Female 6.1
Sample B Female 5.8
Sample C Male 6.3
Sample D Male 5.6
Ventral hippocampus
nTPM: 7.9
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 7.2
Sample C Male 9.3
Sample D Male 8.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 3.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.8
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.5
Sample A Male 3.9
Sample B Male 4.1
Sample C Female 3.5
Sample D Female 3.8
Hippocampal formation
nTPM: 3.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.3
Sample A Male 3.6
Sample B Male 3.9
Sample C Female 4.2
Sample D Female 3.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
69531103 Antisense, RP_050426_01_C07, Mouse strain C57BL/6J (56 days, male) 0.4

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