We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
YJEFN3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • YJEFN3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:108.1 nTPM
HPA Brain:62.5 nTPM
GTEx:108.1 nTPM
FANTOM5:48.7 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:6.5 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.5
Sample id Sample description nTPM
Amygdala
nTPM: 30.1
2517 Female, age 94, left hemisphere 55.3
1987 Female, age 91, left hemisphere 51.3
2514 Male, age 75, right hemisphere 19.2
2814 Male, age 76, right hemisphere 14.6
2695 Female, age 67, right hemisphere 10.0
Basal amygdala
nTPM: 62.5
2110 Male, age 80, left hemisphere 84.7
2243 Female, age 91, right hemisphere 83.5
2685 Female, age 94, left hemisphere 73.8
2827 Female, age 67, right hemisphere 52.1
2609 Male, age 75, right hemisphere 47.9
1955 Male, age 76, both hemispheres 33.1
Central amygdala
nTPM: 41.2
2239 Male, age 80, left hemisphere 60.0
2826 Female, age 94, left hemisphere 57.3
2701 Female, age 91, right hemisphere 37.7
2515 Male, age 75, right hemisphere 34.5
1905 Male, age 76, both hemispheres 16.4
Corticomedial amygdala
nTPM: 56.8
2829 Male, age 80, left hemisphere 94.8
2242 Female, age 91, right hemisphere 71.4
2429 Female, age 94, left hemisphere 52.3
2428 Male, age 75, right hemisphere 47.2
2535 Female, age 67, right hemisphere 44.2
2240 Male, age 76, both hemispheres 31.2
Lateral amygdala
nTPM: 40.9
2534 Female, age 94, left hemisphere 71.7
2255 Female, age 91, right hemisphere 41.4
2256 Male, age 80, left hemisphere 38.6
2830 Female, age 67, right hemisphere 36.2
2516 Male, age 75, right hemisphere 32.5
1883 Male, age 76, both hemispheres 24.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 108.1
Samples: 181

Max nTPM: 441.8
Min nTPM: 17.3
Std nTPM: 61.0
Median nTPM: 101.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 441.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 338.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 317.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 294.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 277.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 251.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 244.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 217.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 215.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 211.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 207.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 199.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 193.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 192.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 190.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 187.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 182.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 182.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 180.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 177.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 174.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 173.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 168.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 163.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 162.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 162.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 156.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 153.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 150.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 147.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 145.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 145.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 144.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 144.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 142.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 142.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 139.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 138.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 137.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 135.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 135.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 135.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 133.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 133.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 131.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 129.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 129.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 128.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 127.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 127.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 126.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 126.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 126.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 125.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 125.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 123.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 123.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 123.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 122.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 120.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 120.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 119.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 119.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 118.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 118.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 117.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 117.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 116.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 115.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 113.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 111.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 111.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 109.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 109.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 108.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 108.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 108.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 106.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 105.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 105.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 104.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 104.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 104.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 103.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 102.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 102.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 102.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 101.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 100.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 99.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 99.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 97.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 97.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 97.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 96.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 96.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 95.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 95.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 94.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 94.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 92.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 89.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 88.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 88.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 88.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 87.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 85.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 84.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 84.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 83.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 81.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 80.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 79.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 78.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 78.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 77.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 77.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 76.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 75.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 74.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 73.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 71.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 70.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 70.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 68.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 68.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 67.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 66.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 65.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 63.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 63.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 62.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 62.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 62.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 61.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 60.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 59.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 59.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 58.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 57.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 56.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 55.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 55.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 55.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 54.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 54.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 52.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 52.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 50.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 48.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 48.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 47.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 45.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 44.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 44.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 44.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 41.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 41.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 40.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 39.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 38.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 37.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 36.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 36.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 36.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 32.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 31.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 30.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 29.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 26.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 25.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 20.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 17.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

48.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 48.7
FF:10151-102I7 76 years, female 48.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.8
Pig sample Sample description nTPM
Amygdala
nTPM: 10.8
Samples: 4

Max nTPM: 16.3
Min nTPM: 8.3
Sample A Female 16.3
Sample B Female 10.0
Sample C Male 8.5
Sample D Male 8.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 6.6
Samples: 4

Max nTPM: 9.5
Min nTPM: 5.4
Sample A Male 5.7
Sample B Male 5.6
Sample C Female 9.5
Sample D Female 5.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
70724595 Antisense, RP_050705_02_B05, Mouse strain C57BL/6J (56 days, male) 0.2
74750064 Antisense, RP_060220_05_F06, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo