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  • EID1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:158.7 nTPM
HPA Brain:102.4 nTPM
GTEx:158.7 nTPM
FANTOM5:461.0 Scaled Tags Per Million
Pig:191.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 86.6
1981 Female, age 72, midline 100.7
2048 Male, age 55, midline 100.6
2816 Male, age 47, midline 93.2
2194 Female, age 79, both hemispheres 79.6
2565 Male, age 75, midline 58.8
Cervical spinal cord, dorsal horn
nTPM: 102.4
2721 Male, age 90, both hemispheres 128.8
2296 Male, age 66, both hemispheres 105.0
2173 Female, age 72, unknown 104.9
1877 Male, age 55, unknown 96.2
2069 Male, age 47, both hemispheres 95.8
2297 Male, age 75, both hemispheres 83.5
Cervical spinal cord, ventral horn
nTPM: 75.6
2098 Female, age 72, unknown 101.0
2480 Male, age 75, both hemispheres 80.7
2068 Male, age 55, unknown 72.4
2295 Male, age 66, both hemispheres 70.9
2820 Female, age 79, both hemispheres 66.6
2809 Male, age 90, both hemispheres 62.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 158.7
Samples: 204

Max nTPM: 257.7
Min nTPM: 98.3
Std nTPM: 28.6
Median nTPM: 157.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 257.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 247.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 236.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 230.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 224.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 219.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 218.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 216.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 213.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 211.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 210.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 208.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 207.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 205.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 204.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 199.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 198.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 197.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 197.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 196.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 194.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 194.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 191.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 190.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 190.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 189.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 189.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 189.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 189.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 188.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 187.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 186.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 186.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 183.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 181.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 181.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 181.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 181.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 180.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 180.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 180.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 179.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 179.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 178.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 177.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 177.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 177.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 176.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 176.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 176.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 176.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 176.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 175.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 175.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 174.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 174.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 173.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 172.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 172.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 171.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 171.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 170.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 170.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 170.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 170.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 169.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 169.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 169.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 169.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 168.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 168.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 167.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 166.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 164.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 164.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 164.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 164.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 164.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 164.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 163.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 163.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 163.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 163.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 163.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 162.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 162.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 161.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 161.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 161.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 161.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 161.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 161.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 160.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 160.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 160.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 159.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 159.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 158.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 158.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 158.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 158.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 157.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 157.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 156.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 156.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 155.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 155.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 155.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 154.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 154.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 154.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 154.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 153.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 153.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 152.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 152.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 152.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 152.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 152.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 152.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 151.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 151.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 151.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 150.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 150.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 150.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 149.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 149.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 148.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 148.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 148.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 148.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 148.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 147.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 147.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 146.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 146.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 146.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 145.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 144.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 144.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 142.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 141.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 141.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 140.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 140.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 139.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 139.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 138.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 138.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 138.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 138.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 138.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 138.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 137.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 137.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 137.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 136.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 136.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 136.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 136.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 136.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 136.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 136.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 136.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 135.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 135.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 134.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 133.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 132.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 132.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 132.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 130.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 130.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 129.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 129.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 128.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 127.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 126.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 126.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 124.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 124.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 123.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 122.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 121.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 120.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 119.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 118.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 118.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 117.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 117.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 115.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 114.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 113.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 112.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 112.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 109.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 108.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 107.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 106.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 104.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 103.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 102.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 98.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

461.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 461.0
FF:10159-103A6 76 years, female 484.9
FF:10181-103D1 60 years, female 437.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 179.5
Samples: 4

Max nTPM: 198.0
Min nTPM: 166.3
Sample A Female 166.3
Sample B Female 198.0
Sample C Male 183.3
Sample D Male 170.4
Ventral spinal cord
nTPM: 191.5
Samples: 4

Max nTPM: 210.8
Min nTPM: 155.1
Sample A Female 155.1
Sample B Female 199.9
Sample C Male 200.2
Sample D Male 210.8

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