MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.4 nTPM
HPA Brain:50.5 nTPM
GTEx:65.4 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:92.3 nTPM
Mouse:58.2 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.8
2019 Male, age 18, unknown 53.2
2586 Male, age 75, left hemisphere 52.8
1827 Male, age 72, unknown 43.6
2411 Female, age 72, unknown 42.3
2219 Male, age 76, both hemispheres 41.4
2828 Female, age 72, unknown 40.6
1833 Male, age 53, unknown 35.5
2666 Male, age 74, left hemisphere 35.1
1830 Male, age 51, unknown 32.1
1870 Female, age 42, unknown 31.0
Dorsal raphe nucleus
nTPM: 41.6
2298 Female, age 72, unknown 49.1
1828 Male, age 53, unknown 43.6
2047 Male, age 72, unknown 40.8
2750 Male, age 76, both hemispheres 40.6
2016 Female, age 72, unknown 33.8
Inferior colliculus
nTPM: 37.5
1890 Male, age 53, unknown 44.3
2097 Female, age 72, unknown 41.8
1848 Female, age 42, unknown 34.1
2849 Male, age 72, unknown 29.6
Median raphe nucleus
nTPM: 36.9
2220 Male, age 76, midline 36.9
Periaquaductal grey, anterior
nTPM: 41.7
1795 Male, age 51, unknown 45.0
1947 Male, age 18, unknown 42.8
2502 Female, age 75, unknown 37.2
Periaquaductal grey, dorsal
nTPM: 32.8
1831 Male, age 72, unknown 35.2
2464 Female, age 72, unknown 33.3
2850 Male, age 76, both hemispheres 31.5
1840 Male, age 53, unknown 31.1
Periaquaductal grey, lateral
nTPM: 32.0
2272 Male, age 74, both hemispheres 38.5
2140 Male, age 76, both hemispheres 29.3
2053 Male, age 18, unknown 28.1
Pretectal area
nTPM: 47.1
2007 Male, age 72, unknown 69.6
1816 Male, age 51, unknown 61.8
1817 Female, age 42, unknown 61.1
1944 Female, age 72, unknown 59.4
2667 Female, age 75, unknown 51.8
1815 Male, age 53, unknown 51.6
2273 Male, age 74, both hemispheres 40.3
2224 Female, age 72, unknown 33.8
2825 Male, age 18, unknown 29.8
2407 Male, age 75, both hemispheres 29.4
2316 Male, age 76, right hemisphere 29.3
Red nucleus
nTPM: 40.7
2785 Male, age 18, unknown 51.0
2725 Female, age 75, unknown 46.1
1821 Female, age 72, unknown 45.0
2503 Female, age 72, unknown 43.1
2823 Male, age 76, right hemisphere 40.4
1954 Female, age 42, unknown 40.0
2588 Male, age 74, left hemisphere 40.0
1904 Male, age 53, unknown 38.8
2769 Male, age 72, unknown 38.1
1865 Male, age 51, unknown 37.0
2227 Male, age 72, unknown 35.5
2584 Male, age 75, left hemisphere 33.9
Substantia nigra
nTPM: 50.5
1916 Female, age 42, unknown 78.3
1851 Male, age 51, unknown 58.8
1889 Female, age 72, unknown 55.9
1941 Male, age 53, unknown 51.4
2665 Male, age 74, both hemispheres 48.7
2409 Female, age 72, unknown 47.9
2241 Male, age 72, unknown 46.1
2699 Male, age 18, unknown 42.7
2583 Male, age 75, right hemisphere 39.3
2590 Female, age 75, unknown 36.1
Superior colliculus
nTPM: 39.8
2087 Female, age 72, unknown 51.6
1796 Male, age 53, unknown 45.8
2668 Female, age 75, unknown 45.7
2261 Male, age 18, unknown 44.6
2587 Male, age 74, left hemisphere 40.1
1895 Male, age 76, right hemisphere 37.4
1913 Female, age 42, unknown 35.6
1995 Male, age 72, unknown 35.5
2664 Male, age 75, both hemispheres 31.3
1839 Male, age 51, unknown 30.8
Ventral tegmental area
nTPM: 44.7
2410 Female, age 72, unknown 57.5
1915 Female, age 42, unknown 52.8
2218 Male, age 76, both hemispheres 51.8
1942 Male, age 51, unknown 42.6
2223 Female, age 72, unknown 32.8
2021 Male, age 53, unknown 30.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.4
Samples: 183

Max nTPM: 129.0
Min nTPM: 16.4
Std nTPM: 20.1
Median nTPM: 64.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 129.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 124.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 120.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 115.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 113.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 109.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 108.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 107.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 104.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 101.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 98.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 92.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.3
Samples: 4

Max nTPM: 101.0
Min nTPM: 59.1
Sample A Female 101.0
Sample B Female 69.1
Sample C Male 75.9
Sample D Male 59.1
Midbrain
nTPM: 81.5
Samples: 4

Max nTPM: 96.9
Min nTPM: 71.7
Sample A Female 96.9
Sample B Female 73.0
Sample C Male 84.5
Sample D Male 71.7
Periaqueductal gray
nTPM: 59.8
Samples: 3

Max nTPM: 65.5
Min nTPM: 52.0
Sample B Female 61.9
Sample C Male 65.5
Sample D Male 52.0
Superior colliculi
nTPM: 92.3
Samples: 4

Max nTPM: 109.0
Min nTPM: 79.4
Sample A Female 109.0
Sample B Female 86.8
Sample C Male 94.1
Sample D Male 79.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 58.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.2
Samples: 4

Max nTPM: 65.7
Min nTPM: 51.6
Sample A Male 65.7
Sample B Male 53.1
Sample C Female 51.6
Sample D Female 62.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
70743841 Antisense, RP_050725_01_G03, Mouse strain C57BL/6J (56 days, male) 5.2
633293 Antisense, RP_040907_02_E11, Mouse strain C57BL/6J (56 days, male) 0.8

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