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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:138.1 nTPM
HPA Brain:203.4 nTPM
GTEx:138.1 nTPM
FANTOM5:437.0 Scaled Tags Per Million
Pig:195.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 203.4
2048 Male, age 55, midline 250.8
1981 Female, age 72, midline 233.7
2565 Male, age 75, midline 184.7
2816 Male, age 47, midline 178.0
2194 Female, age 79, both hemispheres 169.6
Cervical spinal cord, dorsal horn
nTPM: 192.4
2069 Male, age 47, both hemispheres 273.6
2296 Male, age 66, both hemispheres 245.8
2173 Female, age 72, unknown 239.3
1877 Male, age 55, unknown 167.6
2721 Male, age 90, both hemispheres 156.3
2297 Male, age 75, both hemispheres 71.4
Cervical spinal cord, ventral horn
nTPM: 191.9
2098 Female, age 72, unknown 377.6
2809 Male, age 90, both hemispheres 198.8
2068 Male, age 55, unknown 168.1
2295 Male, age 66, both hemispheres 167.3
2480 Male, age 75, both hemispheres 123.8
2820 Female, age 79, both hemispheres 115.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 138.1
Samples: 204

Max nTPM: 607.6
Min nTPM: 31.9
Std nTPM: 71.8
Median nTPM: 119.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 607.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 433.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 424.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 312.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 300.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 284.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 271.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 271.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 261.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 259.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 256.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 254.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 253.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 250.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 250.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 246.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 244.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 237.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 236.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 228.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 227.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 225.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 223.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 217.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 217.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 216.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 213.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 205.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 204.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 203.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 202.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 201.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 200.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 200.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 191.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 190.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 188.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 187.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 185.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 184.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 181.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 180.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 179.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 179.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 176.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 175.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 174.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 171.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 170.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 170.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 168.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 167.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 165.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 163.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 163.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 162.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 160.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 159.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 156.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 155.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 154.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 153.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 152.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 150.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 150.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 149.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 148.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 148.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 147.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 146.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 145.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 144.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 142.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 142.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 142.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 140.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 140.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 138.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 138.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 136.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 135.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 135.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 134.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 131.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 131.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 131.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 128.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 128.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 127.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 127.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 127.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 126.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 125.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 124.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 123.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 123.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 122.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 122.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 121.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 121.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 120.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 120.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 118.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 118.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 116.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 116.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 115.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 114.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 114.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 114.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 114.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 112.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 111.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 111.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 111.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 111.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 110.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 110.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 110.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 110.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 109.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 109.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 108.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 108.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 107.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 107.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 107.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 107.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 106.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 105.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 104.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 104.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 103.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 103.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 103.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 103.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 102.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 102.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 101.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 101.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 101.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 100.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 100.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 99.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 99.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 97.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 97.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 97.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 96.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 96.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 96.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 95.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 94.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 94.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 94.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 94.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 93.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 93.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 93.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 91.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 91.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 89.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 89.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 88.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 85.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 85.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 84.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 83.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 83.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 83.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 81.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 80.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 78.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 76.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 76.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 75.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 75.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 73.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 73.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 72.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 72.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 71.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 71.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 70.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 70.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 68.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 67.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 67.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 66.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 65.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 64.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 63.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 61.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 61.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 58.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 57.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 54.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 47.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 47.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 47.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 47.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 40.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 40.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 31.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

437.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 437.0
FF:10181-103D1 60 years, female 472.8
FF:10159-103A6 76 years, female 401.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 195.2
Samples: 4

Max nTPM: 366.6
Min nTPM: 73.0
Sample A Female 73.0
Sample B Female 220.2
Sample C Male 366.6
Sample D Male 121.0
Ventral spinal cord
nTPM: 109.3
Samples: 4

Max nTPM: 169.3
Min nTPM: 52.0
Sample A Female 52.0
Sample B Female 114.5
Sample C Male 169.3
Sample D Male 101.2

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