MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.4 nTPM
HPA Brain:35.2 nTPM
GTEx:23.4 nTPM
FANTOM5:17.8 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:94.1 nTPM
Allen mouse:3.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.6
2586 Male, age 75, left hemisphere 46.3
2666 Male, age 74, left hemisphere 35.7
2019 Male, age 18, unknown 34.1
1827 Male, age 72, unknown 27.5
2828 Female, age 72, unknown 27.2
2411 Female, age 72, unknown 24.1
1833 Male, age 53, unknown 22.5
1870 Female, age 42, unknown 21.0
1830 Male, age 51, unknown 19.8
2219 Male, age 76, both hemispheres 18.1
Dorsal raphe nucleus
nTPM: 28.4
1828 Male, age 53, unknown 34.1
2047 Male, age 72, unknown 33.3
2298 Female, age 72, unknown 29.0
2750 Male, age 76, both hemispheres 23.1
2016 Female, age 72, unknown 22.4
Inferior colliculus
nTPM: 31.1
2097 Female, age 72, unknown 38.4
1890 Male, age 53, unknown 34.7
1848 Female, age 42, unknown 27.1
2849 Male, age 72, unknown 24.1
Median raphe nucleus
nTPM: 21.5
2220 Male, age 76, midline 21.5
Periaquaductal grey, anterior
nTPM: 28.9
1947 Male, age 18, unknown 31.1
2502 Female, age 75, unknown 28.2
1795 Male, age 51, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 25.3
2850 Male, age 76, both hemispheres 29.2
1840 Male, age 53, unknown 27.7
2464 Female, age 72, unknown 23.9
1831 Male, age 72, unknown 20.4
Periaquaductal grey, lateral
nTPM: 23.4
2140 Male, age 76, both hemispheres 35.3
2053 Male, age 18, unknown 19.5
2272 Male, age 74, both hemispheres 15.3
Pretectal area
nTPM: 28.0
1816 Male, age 51, unknown 41.8
2007 Male, age 72, unknown 40.4
1817 Female, age 42, unknown 36.7
1944 Female, age 72, unknown 34.1
1815 Male, age 53, unknown 26.0
2667 Female, age 75, unknown 25.3
2407 Male, age 75, both hemispheres 23.8
2316 Male, age 76, right hemisphere 22.5
2825 Male, age 18, unknown 20.8
2224 Female, age 72, unknown 19.5
2273 Male, age 74, both hemispheres 17.0
Red nucleus
nTPM: 24.5
2785 Male, age 18, unknown 30.7
2725 Female, age 75, unknown 29.6
1821 Female, age 72, unknown 28.1
2588 Male, age 74, left hemisphere 28.0
2584 Male, age 75, left hemisphere 26.4
2769 Male, age 72, unknown 24.0
2227 Male, age 72, unknown 23.5
1954 Female, age 42, unknown 23.1
2503 Female, age 72, unknown 22.9
2823 Male, age 76, right hemisphere 21.8
1865 Male, age 51, unknown 18.7
1904 Male, age 53, unknown 16.8
Substantia nigra
nTPM: 35.2
1916 Female, age 42, unknown 47.7
2241 Male, age 72, unknown 43.4
1851 Male, age 51, unknown 38.7
1941 Male, age 53, unknown 38.7
2583 Male, age 75, right hemisphere 35.4
1889 Female, age 72, unknown 34.5
2665 Male, age 74, both hemispheres 32.9
2409 Female, age 72, unknown 31.8
2699 Male, age 18, unknown 25.0
2590 Female, age 75, unknown 24.1
Superior colliculus
nTPM: 25.6
2668 Female, age 75, unknown 31.8
2087 Female, age 72, unknown 31.2
2664 Male, age 75, both hemispheres 31.2
2261 Male, age 18, unknown 28.4
1796 Male, age 53, unknown 26.7
1895 Male, age 76, right hemisphere 26.3
1839 Male, age 51, unknown 25.3
2587 Male, age 74, left hemisphere 20.7
1913 Female, age 42, unknown 17.4
1995 Male, age 72, unknown 17.0
Ventral tegmental area
nTPM: 26.9
1915 Female, age 42, unknown 33.9
2410 Female, age 72, unknown 32.1
1942 Male, age 51, unknown 27.0
2218 Male, age 76, both hemispheres 25.5
2021 Male, age 53, unknown 25.0
2223 Female, age 72, unknown 18.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.4
Samples: 183

Max nTPM: 93.9
Min nTPM: 5.7
Std nTPM: 10.8
Median nTPM: 21.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 93.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 65.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 62.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 59.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 46.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 44.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 43.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 43.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 42.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 42.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.8
FF:10158-103A5 76 years, female 17.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 29.6
Min nTPM: 6.5
Sample A Female 29.6
Sample B Female 13.2
Sample C Male 22.5
Sample D Male 6.5
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 40.9
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 15.5
Sample C Male 40.9
Sample D Male 26.9
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 18.4
Min nTPM: 11.8
Sample B Female 14.5
Sample C Male 18.4
Sample D Male 11.8
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 35.5
Min nTPM: 16.2
Sample A Female 23.7
Sample B Female 16.2
Sample C Male 35.5
Sample D Male 21.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.1
Samples: 4

Max nTPM: 101.2
Min nTPM: 86.4
Sample A Male 86.4
Sample B Male 94.0
Sample C Female 101.2
Sample D Female 94.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
70429315 Antisense, RP_050614_01_D10, Mouse strain C57BL/6J (56 days, male) 3.5

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