MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.5 nTPM
HPA Brain:24.5 nTPM
GTEx:0.5 nTPM
FANTOM5:23.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2219 Male, age 76, both hemispheres 33.3
1830 Male, age 51, unknown 18.7
2666 Male, age 74, left hemisphere 18.2
1833 Male, age 53, unknown 15.7
1870 Female, age 42, unknown 14.3
2019 Male, age 18, unknown 13.3
2828 Female, age 72, unknown 12.9
2411 Female, age 72, unknown 12.3
1827 Male, age 72, unknown 11.6
2586 Male, age 75, left hemisphere 9.0
Dorsal raphe nucleus
nTPM: 18.8
2298 Female, age 72, unknown 27.8
2016 Female, age 72, unknown 22.9
1828 Male, age 53, unknown 16.8
2047 Male, age 72, unknown 13.4
2750 Male, age 76, both hemispheres 13.3
Inferior colliculus
nTPM: 16.9
2097 Female, age 72, unknown 19.7
2849 Male, age 72, unknown 17.1
1890 Male, age 53, unknown 16.9
1848 Female, age 42, unknown 13.8
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 18.7
2502 Female, age 75, unknown 23.4
1795 Male, age 51, unknown 16.7
1947 Male, age 18, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 19.0
2850 Male, age 76, both hemispheres 21.8
1840 Male, age 53, unknown 21.0
1831 Male, age 72, unknown 18.3
2464 Female, age 72, unknown 15.1
Periaquaductal grey, lateral
nTPM: 24.5
2272 Male, age 74, both hemispheres 31.3
2053 Male, age 18, unknown 21.4
2140 Male, age 76, both hemispheres 20.8
Pretectal area
nTPM: 16.6
2273 Male, age 74, both hemispheres 29.0
2224 Female, age 72, unknown 20.8
2316 Male, age 76, right hemisphere 17.7
2825 Male, age 18, unknown 16.8
1816 Male, age 51, unknown 16.4
1815 Male, age 53, unknown 16.3
1944 Female, age 72, unknown 14.6
2407 Male, age 75, both hemispheres 14.3
1817 Female, age 42, unknown 12.8
2007 Male, age 72, unknown 12.8
2667 Female, age 75, unknown 10.9
Red nucleus
nTPM: 14.2
2584 Male, age 75, left hemisphere 18.7
2725 Female, age 75, unknown 17.7
2769 Male, age 72, unknown 17.5
1904 Male, age 53, unknown 16.7
2227 Male, age 72, unknown 15.2
2823 Male, age 76, right hemisphere 14.7
1865 Male, age 51, unknown 14.4
2503 Female, age 72, unknown 13.9
2785 Male, age 18, unknown 13.5
1821 Female, age 72, unknown 11.0
1954 Female, age 42, unknown 10.1
2588 Male, age 74, left hemisphere 7.0
Substantia nigra
nTPM: 19.0
2699 Male, age 18, unknown 34.4
2665 Male, age 74, both hemispheres 23.7
2590 Female, age 75, unknown 21.6
2241 Male, age 72, unknown 19.7
1916 Female, age 42, unknown 18.8
1851 Male, age 51, unknown 17.5
2583 Male, age 75, right hemisphere 15.8
1889 Female, age 72, unknown 14.3
1941 Male, age 53, unknown 12.9
2409 Female, age 72, unknown 11.5
Superior colliculus
nTPM: 17.5
2587 Male, age 74, left hemisphere 25.9
1995 Male, age 72, unknown 24.7
1913 Female, age 42, unknown 19.3
1796 Male, age 53, unknown 18.2
2087 Female, age 72, unknown 17.8
1839 Male, age 51, unknown 15.6
1895 Male, age 76, right hemisphere 14.9
2664 Male, age 75, both hemispheres 13.4
2668 Female, age 75, unknown 12.9
2261 Male, age 18, unknown 12.6
Ventral tegmental area
nTPM: 19.7
2223 Female, age 72, unknown 25.0
2410 Female, age 72, unknown 20.7
2021 Male, age 53, unknown 19.1
1942 Male, age 51, unknown 18.4
1915 Female, age 42, unknown 17.7
2218 Male, age 76, both hemispheres 17.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.5
Samples: 183

Max nTPM: 5.1
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 0.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 4.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 4.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 3.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 2.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 2.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 2.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 2.5
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 2.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 2.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 1.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.2
FF:10158-103A5 76 years, female 23.2

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