MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.8 nTPM
HPA Brain:186.1 nTPM
GTEx:58.8 nTPM
FANTOM5:415.7 Scaled Tags Per Million
Pig:265.8 nTPM
Mouse:78.2 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 186.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.8
2586 Male, age 75, left hemisphere 161.7
2828 Female, age 72, unknown 152.6
1870 Female, age 42, unknown 141.5
2219 Male, age 76, both hemispheres 136.7
1827 Male, age 72, unknown 120.9
1833 Male, age 53, unknown 119.2
1830 Male, age 51, unknown 109.6
2411 Female, age 72, unknown 107.3
2666 Male, age 74, left hemisphere 88.2
2019 Male, age 18, unknown 80.2
Dorsal raphe nucleus
nTPM: 161.9
2016 Female, age 72, unknown 204.1
2298 Female, age 72, unknown 159.7
2047 Male, age 72, unknown 154.3
1828 Male, age 53, unknown 150.2
2750 Male, age 76, both hemispheres 141.2
Inferior colliculus
nTPM: 136.6
2097 Female, age 72, unknown 153.5
2849 Male, age 72, unknown 137.4
1848 Female, age 42, unknown 134.3
1890 Male, age 53, unknown 121.1
Median raphe nucleus
nTPM: 145.5
2220 Male, age 76, midline 145.5
Periaquaductal grey, anterior
nTPM: 160.9
1795 Male, age 51, unknown 170.5
2502 Female, age 75, unknown 159.5
1947 Male, age 18, unknown 152.6
Periaquaductal grey, dorsal
nTPM: 162.8
1840 Male, age 53, unknown 196.4
2850 Male, age 76, both hemispheres 171.5
1831 Male, age 72, unknown 153.5
2464 Female, age 72, unknown 129.7
Periaquaductal grey, lateral
nTPM: 186.1
2272 Male, age 74, both hemispheres 205.8
2140 Male, age 76, both hemispheres 190.0
2053 Male, age 18, unknown 162.6
Pretectal area
nTPM: 144.2
2273 Male, age 74, both hemispheres 225.8
2224 Female, age 72, unknown 191.2
2825 Male, age 18, unknown 163.8
2316 Male, age 76, right hemisphere 155.0
2667 Female, age 75, unknown 149.7
2407 Male, age 75, both hemispheres 143.3
1944 Female, age 72, unknown 131.0
1816 Male, age 51, unknown 117.0
1815 Male, age 53, unknown 112.1
1817 Female, age 42, unknown 107.0
2007 Male, age 72, unknown 89.8
Red nucleus
nTPM: 100.4
2227 Male, age 72, unknown 128.6
2769 Male, age 72, unknown 124.9
2503 Female, age 72, unknown 123.1
2725 Female, age 75, unknown 113.0
1954 Female, age 42, unknown 109.1
1904 Male, age 53, unknown 99.1
2584 Male, age 75, left hemisphere 96.0
1821 Female, age 72, unknown 89.6
2785 Male, age 18, unknown 88.8
1865 Male, age 51, unknown 81.3
2588 Male, age 74, left hemisphere 78.7
2823 Male, age 76, right hemisphere 72.9
Substantia nigra
nTPM: 134.4
2699 Male, age 18, unknown 194.7
1916 Female, age 42, unknown 168.8
1851 Male, age 51, unknown 136.0
2241 Male, age 72, unknown 128.4
1941 Male, age 53, unknown 124.4
2583 Male, age 75, right hemisphere 123.5
2590 Female, age 75, unknown 123.1
2665 Male, age 74, both hemispheres 122.3
2409 Female, age 72, unknown 115.2
1889 Female, age 72, unknown 107.9
Superior colliculus
nTPM: 131.6
2664 Male, age 75, both hemispheres 171.8
2261 Male, age 18, unknown 148.7
1839 Male, age 51, unknown 147.2
1796 Male, age 53, unknown 139.5
1995 Male, age 72, unknown 134.5
2587 Male, age 74, left hemisphere 129.8
1913 Female, age 42, unknown 128.0
2668 Female, age 75, unknown 114.7
2087 Female, age 72, unknown 104.8
1895 Male, age 76, right hemisphere 97.1
Ventral tegmental area
nTPM: 145.1
1942 Male, age 51, unknown 181.0
2021 Male, age 53, unknown 172.0
1915 Female, age 42, unknown 159.3
2218 Male, age 76, both hemispheres 131.7
2223 Female, age 72, unknown 124.3
2410 Female, age 72, unknown 102.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 58.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.8
Samples: 183

Max nTPM: 150.0
Min nTPM: 15.9
Std nTPM: 21.7
Median nTPM: 57.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 150.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 117.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 109.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 106.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 106.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 104.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 103.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 102.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 101.0
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 100.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 95.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 415.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 415.7
FF:10158-103A5 76 years, female 415.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 265.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 228.2
Samples: 4

Max nTPM: 277.6
Min nTPM: 183.0
Sample A Female 277.6
Sample B Female 230.1
Sample C Male 221.9
Sample D Male 183.0
Midbrain
nTPM: 217.8
Samples: 4

Max nTPM: 336.6
Min nTPM: 143.2
Sample A Female 336.6
Sample B Female 244.6
Sample C Male 146.8
Sample D Male 143.2
Periaqueductal gray
nTPM: 265.8
Samples: 3

Max nTPM: 303.5
Min nTPM: 246.4
Sample B Female 247.6
Sample C Male 303.5
Sample D Male 246.4
Superior colliculi
nTPM: 169.3
Samples: 4

Max nTPM: 232.0
Min nTPM: 142.5
Sample A Female 232.0
Sample B Female 142.5
Sample C Male 143.9
Sample D Male 158.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 78.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.2
Samples: 4

Max nTPM: 81.7
Min nTPM: 75.3
Sample A Male 77.5
Sample B Male 78.3
Sample C Female 81.7
Sample D Female 75.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71487124 Antisense, RP_050913_01_C10, Mouse strain C57BL/6J (56 days, male) 0.6

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