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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
76.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 67.1
1830
Male, age 51, unknown
85.6
1833
Male, age 53, unknown
78.1
2219
Male, age 76, both hemispheres
75.4
2666
Male, age 74, left hemisphere
72.3
1870
Female, age 42, unknown
66.2
2828
Female, age 72, unknown
65.2
2586
Male, age 75, left hemisphere
61.6
2019
Male, age 18, unknown
60.7
1827
Male, age 72, unknown
56.8
2411
Female, age 72, unknown
49.3
Dorsal raphe nucleus nTPM: 64.0
2750
Male, age 76, both hemispheres
73.4
2047
Male, age 72, unknown
72.5
1828
Male, age 53, unknown
66.1
2016
Female, age 72, unknown
63.0
2298
Female, age 72, unknown
45.0
Inferior colliculus nTPM: 65.3
2849
Male, age 72, unknown
86.0
1848
Female, age 42, unknown
65.8
1890
Male, age 53, unknown
63.3
2097
Female, age 72, unknown
46.0
Median raphe nucleus nTPM: 76.7
2220
Male, age 76, midline
76.7
Periaquaductal grey, anterior nTPM: 64.4
1947
Male, age 18, unknown
69.4
1795
Male, age 51, unknown
64.8
2502
Female, age 75, unknown
59.0
Periaquaductal grey, dorsal nTPM: 70.8
2850
Male, age 76, both hemispheres
94.1
2464
Female, age 72, unknown
64.5
1831
Male, age 72, unknown
64.4
1840
Male, age 53, unknown
60.2
Periaquaductal grey, lateral nTPM: 75.2
2140
Male, age 76, both hemispheres
85.8
2272
Male, age 74, both hemispheres
74.8
2053
Male, age 18, unknown
64.9
Pretectal area nTPM: 70.4
2316
Male, age 76, right hemisphere
93.1
2407
Male, age 75, both hemispheres
87.9
2667
Female, age 75, unknown
87.3
2825
Male, age 18, unknown
70.3
1815
Male, age 53, unknown
66.7
2007
Male, age 72, unknown
65.3
2224
Female, age 72, unknown
64.4
1816
Male, age 51, unknown
61.4
1944
Female, age 72, unknown
61.1
2273
Male, age 74, both hemispheres
59.9
1817
Female, age 42, unknown
57.3
Red nucleus nTPM: 67.4
2584
Male, age 75, left hemisphere
88.7
2823
Male, age 76, right hemisphere
80.5
2769
Male, age 72, unknown
71.2
2588
Male, age 74, left hemisphere
71.1
1904
Male, age 53, unknown
69.2
1865
Male, age 51, unknown
68.5
2725
Female, age 75, unknown
67.7
2227
Male, age 72, unknown
67.4
2503
Female, age 72, unknown
60.3
2785
Male, age 18, unknown
59.9
1954
Female, age 42, unknown
56.2
1821
Female, age 72, unknown
48.5
Substantia nigra nTPM: 70.3
2699
Male, age 18, unknown
89.7
2583
Male, age 75, right hemisphere
78.9
2590
Female, age 75, unknown
78.2
2409
Female, age 72, unknown
75.0
1941
Male, age 53, unknown
70.6
2665
Male, age 74, both hemispheres
64.1
1916
Female, age 42, unknown
63.5
1889
Female, age 72, unknown
62.5
1851
Male, age 51, unknown
60.8
2241
Male, age 72, unknown
59.4
Superior colliculus nTPM: 69.6
2664
Male, age 75, both hemispheres
82.9
1895
Male, age 76, right hemisphere
76.6
2087
Female, age 72, unknown
73.7
2587
Male, age 74, left hemisphere
72.9
1913
Female, age 42, unknown
72.6
1839
Male, age 51, unknown
71.1
2261
Male, age 18, unknown
68.7
1995
Male, age 72, unknown
65.0
1796
Male, age 53, unknown
60.4
2668
Female, age 75, unknown
52.6
Ventral tegmental area nTPM: 65.8
2218
Male, age 76, both hemispheres
84.4
2223
Female, age 72, unknown
74.0
2021
Male, age 53, unknown
69.3
1942
Male, age 51, unknown
61.0
1915
Female, age 42, unknown
54.2
2410
Female, age 72, unknown
51.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 23.0
Samples: 183
Max nTPM: 57.3
Min nTPM: 0.3
Std nTPM: 13.0
Median nTPM: 20.9
The Human Protein Atlas project is funded
