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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION KIDNEY LIVER LUNG LYMPH NODE NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:37.1 nTPM
GTEx:37.1 nTPM
FANTOM5:114.0 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 37.1
Samples: 105

Max nTPM: 90.6
Min nTPM: 23.0
Std nTPM: 9.9
Median nTPM:
218_1 71 years, female 90.6
353_1 82 years, female 57.4
352_1 62 years, male 57.3
237_1 82 years, male 55.0
350_1 84 years, female 54.5
351_1 91 years, male 54.5
356_1 87 years, female 53.6
319_1 81 years, male 51.7
384_1 83 years, male 50.0
163_1 78 years, male 49.2
379_1 60 years, male 49.2
321_1 62 years, female 48.0
320_1 89 years, female 47.6
386_1 76 years, male 47.5
490_1 67 years, female 47.1
354_1 81 years, female 46.6
375_1 74 years, female 46.5
293_1 68 years, female 45.9
355_1 70 years, female 45.4
173_1 67 years, male 44.6
447_1 81 years, male 44.6
452_1 88 years, female 44.0
377_1 82 years, female 43.9
506_1 65 years, male 43.8
243_1 75 years, male 43.7
347_1 72 years, male 43.6
349_1 83 years, male 43.5
42_1 85 years, male 42.4
6_1 73 years, female 41.8
99_1 64 years, male 41.3
295_1 61 years, female 41.0
348_1 84 years, male 40.7
172_1 72 years, female 40.3
177_1 74 years, male 40.1
35_1 74 years, female 39.8
317_1 60 years, male 39.8
501_1 88 years, male 39.8
41_1 94 years, female 39.2
4_1 88 years, female 39.1
119_1 70 years, female 39.0
292_1 71 years, male 39.0
376_1 75 years, female 39.0
316_1 62 years, male 38.9
2_1 77 years, female 38.1
17_1 71 years, male 37.6
307_1 66 years, female 36.2
32_1 67 years, male 36.1
318_1 68 years, male 36.1
117_1 61 years, male 35.8
264_1 73 years, female 35.8
265_1 87 years, male 35.2
251_1 78 years, male 35.1
313_1 79 years, female 35.1
286_1 68 years, female 35.0
503_1 68 years, male 34.7
413_1 59 years, female 34.5
322_1 76 years, male 34.2
394_1 75 years, female 34.0
415_1 77 years, female 34.0
480_1 63 years, male 33.7
396_1 62 years, male 33.6
145_1 84 years, male 33.5
425_1 59 years, female 33.4
109_1 81 years, female 33.2
335_1 73 years, female 32.9
389_1 86 years, female 32.6
315_1 62 years, female 32.4
291_1 76 years, male 32.3
189_1 76 years, male 32.1
526_1 61 years, male 32.1
120_1 70 years, female 31.9
229_1 69 years, female 31.9
491_1 89 years, female 31.7
246_1 77 years, male 31.0
115_1 83 years, male 30.2
517_1 88 years, male 29.7
466_1 57 years, female 29.5
18_1 88 years, male 29.3
406_1 79 years, male 29.3
495_1 57 years, female 29.1
324_1 76 years, male 29.0
404_1 82 years, female 29.0
311_1 78 years, male 28.8
254_1 77 years, female 28.7
137_1 83 years, male 28.6
468_1 89 years, male 28.4
266_1 85 years, male 28.2
153_1 70 years, female 28.1
414_1 84 years, female 28.1
288_1 66 years, female 27.7
139_1 64 years, female 27.5
142_1 61 years, female 27.5
518_1 75 years, female 27.3
314_1 67 years, male 27.0
81_1 67 years, male 26.9
9_1 66 years, female 26.8
89_1 63 years, male 25.8
308_1 70 years, female 25.6
126_1 63 years, male 25.1
499_1 55 years, female 25.0
217_1 76 years, male 24.9
43_1 64 years, female 24.2
405_1 91 years, male 23.7
162_1 79 years, female 23.1
149_1 88 years, male 23.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

114.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 114.0
FF:10030-101E3 24-65 years, mixed 114.0

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