A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
84.9
nTPM
Monaco:
167.6
nTPM
Schmiedel:
77.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.9
HPA sample
nTPM
Classical monocyte nTPM: 84.9
Samples: 6
Max nTPM: 105.2
Min nTPM: 60.3
P10809_1003
91.4
P10809_1020
104.9
P10809_1039
105.2
P10809_1058
60.3
P10809_1080
73.0
P10809_1107
74.7
Intermediate monocyte nTPM: 83.9
Samples: 6
Max nTPM: 92.6
Min nTPM: 67.9
P10809_1004
91.2
P10809_1023
92.6
P10809_1042
76.4
P10809_1061
88.0
P10809_1081
67.9
P10809_1108
87.3
Non-classical monocyte nTPM: 62.2
Samples: 5
Max nTPM: 68.7
Min nTPM: 52.2
P10809_1005
60.7
P10809_1053
68.7
P10809_1072
68.2
P10809_1082
52.2
P10809_1109
61.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.6
Monaco sample
nTPM
Classical monocyte nTPM: 167.7
Samples: 4
Max nTPM: 208.9
Min nTPM: 131.5
RHH5313_R3680
156.7
RHH5221_R3593
208.9
RHH5250_R3622
173.5
RHH5279_R3651
131.5
Intermediate monocyte nTPM: 132.3
Samples: 4
Max nTPM: 150.8
Min nTPM: 120.7
RHH5314_R3681
126.8
RHH5222_R3594
130.7
RHH5251_R3623
120.7
RHH5280_R3652
150.8
Non-classical monocyte nTPM: 106.1
Samples: 4
Max nTPM: 122.4
Min nTPM: 92.5
RHH5315_R3682
122.4
RHH5223_R3595
93.7
RHH5252_R3624
115.7
RHH5281_R3653
92.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.0
Schmiedel sample id
TPM
Classical monocyte TPM: 77.0
Samples: 91
Max TPM: 98.7
Min TPM: 44.0
MONOCYTES_1
98.7
MONOCYTES_2
97.3
MONOCYTES_3
96.2
MONOCYTES_4
95.5
MONOCYTES_5
94.7
MONOCYTES_6
94.6
MONOCYTES_7
94.1
MONOCYTES_8
93.7
MONOCYTES_9
93.4
MONOCYTES_10
92.8
MONOCYTES_11
92.6
MONOCYTES_12
92.3
MONOCYTES_13
91.6
MONOCYTES_14
90.8
MONOCYTES_15
90.7
MONOCYTES_16
90.0
MONOCYTES_17
89.6
MONOCYTES_18
87.1
MONOCYTES_19
85.4
MONOCYTES_20
84.6
MONOCYTES_21
83.5
MONOCYTES_22
82.6
MONOCYTES_23
82.1
MONOCYTES_24
81.8
MONOCYTES_25
81.6
MONOCYTES_26
81.5
MONOCYTES_27
81.1
MONOCYTES_28
80.7
MONOCYTES_29
80.7
MONOCYTES_30
80.2
MONOCYTES_31
80.0
MONOCYTES_32
79.4
MONOCYTES_33
79.4
MONOCYTES_34
79.3
MONOCYTES_35
78.9
MONOCYTES_36
78.8
MONOCYTES_37
78.8
MONOCYTES_38
78.8
MONOCYTES_39
78.6
MONOCYTES_40
77.3
MONOCYTES_41
77.1
MONOCYTES_42
77.1
MONOCYTES_43
76.7
MONOCYTES_44
76.7
MONOCYTES_45
75.4
MONOCYTES_46
75.4
MONOCYTES_47
75.3
MONOCYTES_48
75.0
MONOCYTES_49
74.9
MONOCYTES_50
74.8
MONOCYTES_51
74.5
MONOCYTES_52
74.5
MONOCYTES_53
74.4
MONOCYTES_54
73.7
MONOCYTES_55
73.7
MONOCYTES_56
73.4
MONOCYTES_57
73.3
MONOCYTES_58
73.1
MONOCYTES_59
72.8
MONOCYTES_60
72.6
MONOCYTES_61
72.4
MONOCYTES_62
72.3
MONOCYTES_63
72.2
MONOCYTES_64
72.1
MONOCYTES_65
71.4
MONOCYTES_66
71.4
MONOCYTES_67
71.0
MONOCYTES_68
70.7
MONOCYTES_69
70.2
MONOCYTES_70
70.1
MONOCYTES_71
69.3
MONOCYTES_72
69.2
MONOCYTES_73
69.1
MONOCYTES_74
68.7
MONOCYTES_75
68.6
MONOCYTES_76
68.4
MONOCYTES_77
68.1
MONOCYTES_78
67.6
MONOCYTES_79
67.2
MONOCYTES_80
66.1
MONOCYTES_81
64.6
MONOCYTES_82
64.5
MONOCYTES_83
64.2
MONOCYTES_84
63.7
MONOCYTES_85
63.6
MONOCYTES_86
63.3
MONOCYTES_87
62.9
MONOCYTES_88
61.0
MONOCYTES_89
57.9
MONOCYTES_90
55.3
MONOCYTES_91
44.0
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Non-classical monocyte TPM: 70.8
Samples: 90
Max TPM: 103.1
Min TPM: 37.4
M2_1
103.1
M2_2
93.6
M2_3
91.5
M2_4
90.3
M2_5
89.0
M2_6
87.3
M2_7
86.3
M2_8
85.7
M2_9
85.0
M2_10
84.5
M2_11
84.1
M2_12
84.0
M2_13
82.8
M2_14
82.8
M2_15
81.6
M2_16
81.3
M2_17
80.0
M2_18
78.2
M2_19
77.6
M2_20
77.5
M2_21
77.4
M2_22
76.8
M2_23
76.4
M2_24
76.4
M2_25
76.4
M2_26
75.7
M2_27
75.5
M2_28
75.0
M2_29
74.9
M2_30
74.8
M2_31
74.7
M2_32
74.7
M2_33
74.4
M2_34
74.1
M2_35
73.6
M2_36
73.2
M2_37
73.0
M2_38
73.0
M2_39
73.0
M2_40
72.5
M2_41
72.4
M2_42
71.4
M2_43
71.3
M2_44
71.3
M2_45
71.0
M2_46
70.2
M2_47
69.4
M2_48
69.3
M2_49
69.0
M2_50
68.9
M2_51
68.6
M2_52
68.2
M2_53
68.0
M2_54
67.6
M2_55
66.7
M2_56
66.6
M2_57
66.4
M2_58
66.3
M2_59
66.3
M2_60
66.2
M2_61
65.9
M2_62
65.3
M2_63
64.9
M2_64
64.5
M2_65
64.5
M2_66
64.4
M2_67
63.6
M2_68
63.5
M2_69
63.2
M2_70
63.2
M2_71
62.3
M2_72
61.8
M2_73
61.6
M2_74
61.5
M2_75
61.4
M2_76
61.4
M2_77
61.2
M2_78
61.0
M2_79
60.9
M2_80
60.2
M2_81
59.5
M2_82
59.2
M2_83
58.7
M2_84
58.0
M2_85
54.4
M2_86
54.1
M2_87
53.9
M2_88
53.2
M2_89
50.8
M2_90
37.4
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