NIPAL3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • NIPAL3
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:98.7 nTPM
GTEx:55.7 nTPM
FANTOM5:91.3 Scaled Tags Per Million
Macaque:54.3 nTPM
Pig:112.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 98.7
2590 Female, age 75, unknown 113.4
2583 Male, age 75, right hemisphere 111.3
2409 Female, age 72, unknown 106.2
2241 Male, age 72, unknown 104.1
1851 Male, age 51, unknown 103.8
1889 Female, age 72, unknown 103.4
1941 Male, age 53, unknown 98.5
1916 Female, age 42, unknown 88.7
2665 Male, age 74, both hemispheres 83.8
2699 Male, age 18, unknown 74.2

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.7
Samples: 183

Max nTPM: 198.7
Min nTPM: 6.7
Std nTPM: 25.6
Median nTPM: 48.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 198.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 183.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 137.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 128.4
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 104.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 103.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 101.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 98.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 96.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 96.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 96.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 96.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 94.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 92.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 92.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 91.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 89.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 89.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 87.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 85.7
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 84.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 83.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 82.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 82.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 81.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 81.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 80.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 79.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 79.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 78.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 78.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 76.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 75.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 73.6
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 73.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 72.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 72.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 70.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 70.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 69.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 69.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 69.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 67.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 67.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 67.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 67.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 67.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 66.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 64.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 62.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 62.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 61.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 61.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 61.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 61.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 60.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 59.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 59.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 58.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 58.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 57.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 57.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 57.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 57.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 56.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 56.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 56.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 55.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 55.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 55.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 55.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 54.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 53.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 53.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 52.8
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 52.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 52.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 51.6
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 51.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 51.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 50.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 50.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 50.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 49.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 49.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 49.3
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 49.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 48.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 48.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 48.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 48.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 48.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 48.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 47.7
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 47.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 47.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 47.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 46.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 46.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 46.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 46.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 45.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 45.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 45.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 45.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 45.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 44.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 44.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 44.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 44.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 43.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 43.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 43.7
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 43.3
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 43.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 43.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 42.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 42.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 42.4
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 42.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 42.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 42.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 41.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 41.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 41.6
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 41.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 41.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 40.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 40.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 40.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 40.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 39.7
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 39.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 39.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 38.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 38.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 38.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 38.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 38.0
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 37.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 37.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 37.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 36.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 36.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 36.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 36.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 36.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 36.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 35.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 35.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 34.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 34.2
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 34.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 33.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 33.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 32.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 32.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 32.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 32.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 32.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 32.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 31.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 31.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 31.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 31.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 31.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 29.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 29.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 26.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 26.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 26.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 24.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 24.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 24.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 23.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 23.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 20.6
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 6.7
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.3
FF:10158-103A5 76 years, female 91.3

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.3
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 54.3
Samples: 1

Max nTPM: 54.3
Min nTPM: 54.3
Sample A 54.3

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 112.5
Samples: 3

Max nTPM: 127.1
Min nTPM: 87.0
Sample A Female 123.5
Sample B Female 87.0
Sample C Male 127.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.