A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.7
nTPM
Monaco:
50.6
nTPM
Schmiedel:
22.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
HPA sample
nTPM
NK-cell nTPM: 15.7
Samples: 6
Max nTPM: 21.8
Min nTPM: 7.8
P10809_1013
7.8
P10809_1033
11.0
P10809_1052
21.8
P10809_1071
18.3
P10809_1093
15.8
P10809_1103
19.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.6
Monaco sample
nTPM
NK-cell nTPM: 50.6
Samples: 4
Max nTPM: 61.6
Min nTPM: 44.1
RHH5316_R3683
45.5
RHH5224_R3596
61.6
RHH5253_R3625
51.0
RHH5282_R3654
44.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.7
Schmiedel sample id
TPM
NK-cell TPM: 22.7
Samples: 90
Max TPM: 31.5
Min TPM: 14.5
NK_1
31.5
NK_2
30.5
NK_3
30.2
NK_4
29.4
NK_5
28.3
NK_6
28.1
NK_7
28.1
NK_8
27.6
NK_9
27.5
NK_10
26.9
NK_11
26.8
NK_12
26.7
NK_13
26.5
NK_14
26.4
NK_15
26.1
NK_16
26.1
NK_17
26.0
NK_18
25.4
NK_19
25.3
NK_20
25.3
NK_21
25.2
NK_22
25.0
NK_23
24.8
NK_24
24.8
NK_25
24.8
NK_26
24.6
NK_27
24.5
NK_28
24.4
NK_29
24.3
NK_30
24.2
NK_31
24.2
NK_32
23.7
NK_33
23.7
NK_34
23.7
NK_35
23.6
NK_36
23.4
NK_37
23.1
NK_38
23.1
NK_39
23.1
NK_40
23.0
NK_41
22.9
NK_42
22.7
NK_43
22.7
NK_44
22.7
NK_45
22.5
NK_46
22.5
NK_47
22.3
NK_48
22.3
NK_49
22.3
NK_50
22.1
NK_51
22.0
NK_52
21.9
NK_53
21.9
NK_54
21.8
NK_55
21.7
NK_56
21.7
NK_57
21.6
NK_58
21.4
NK_59
21.3
NK_60
21.2
NK_61
21.1
NK_62
21.1
NK_63
21.1
NK_64
21.0
NK_65
21.0
NK_66
20.8
NK_67
20.7
NK_68
20.5
NK_69
20.5
NK_70
20.5
NK_71
20.3
NK_72
20.2
NK_73
20.0
NK_74
20.0
NK_75
19.8
NK_76
19.7
NK_77
19.1
NK_78
19.0
NK_79
18.8
NK_80
18.7
NK_81
18.6
NK_82
18.1
NK_83
18.1
NK_84
18.1
NK_85
17.9
NK_86
17.8
NK_87
16.7
NK_88
15.9
NK_89
15.8
NK_90
14.5
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