MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.0 nTPM
HPA Brain:16.1 nTPM
GTEx:27.0 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:30.7 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.0
2586 Male, age 75, left hemisphere 16.2
2411 Female, age 72, unknown 15.7
2019 Male, age 18, unknown 15.5
1870 Female, age 42, unknown 13.9
2666 Male, age 74, left hemisphere 13.1
2828 Female, age 72, unknown 12.3
1833 Male, age 53, unknown 11.9
1827 Male, age 72, unknown 11.6
1830 Male, age 51, unknown 11.6
2219 Male, age 76, both hemispheres 8.3
Dorsal raphe nucleus
nTPM: 12.2
2750 Male, age 76, both hemispheres 13.8
2047 Male, age 72, unknown 13.3
2016 Female, age 72, unknown 12.4
1828 Male, age 53, unknown 11.5
2298 Female, age 72, unknown 10.2
Inferior colliculus
nTPM: 10.7
1890 Male, age 53, unknown 12.5
2097 Female, age 72, unknown 11.1
1848 Female, age 42, unknown 10.2
2849 Male, age 72, unknown 9.3
Median raphe nucleus
nTPM: 9.4
2220 Male, age 76, midline 9.4
Periaquaductal grey, anterior
nTPM: 12.3
2502 Female, age 75, unknown 12.8
1795 Male, age 51, unknown 12.3
1947 Male, age 18, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 9.6
2464 Female, age 72, unknown 11.4
1831 Male, age 72, unknown 10.8
1840 Male, age 53, unknown 9.6
2850 Male, age 76, both hemispheres 6.5
Periaquaductal grey, lateral
nTPM: 10.3
2140 Male, age 76, both hemispheres 10.6
2272 Male, age 74, both hemispheres 10.4
2053 Male, age 18, unknown 9.8
Pretectal area
nTPM: 10.3
2407 Male, age 75, both hemispheres 13.3
1815 Male, age 53, unknown 11.8
1816 Male, age 51, unknown 11.7
1817 Female, age 42, unknown 11.2
2007 Male, age 72, unknown 11.2
2316 Male, age 76, right hemisphere 10.3
2224 Female, age 72, unknown 9.9
1944 Female, age 72, unknown 9.6
2825 Male, age 18, unknown 9.4
2273 Male, age 74, both hemispheres 7.5
2667 Female, age 75, unknown 7.4
Red nucleus
nTPM: 16.1
2588 Male, age 74, left hemisphere 22.7
2503 Female, age 72, unknown 20.4
1821 Female, age 72, unknown 16.7
2769 Male, age 72, unknown 16.6
2227 Male, age 72, unknown 16.5
1904 Male, age 53, unknown 16.3
2725 Female, age 75, unknown 15.9
1865 Male, age 51, unknown 14.3
1954 Female, age 42, unknown 14.0
2584 Male, age 75, left hemisphere 13.7
2823 Male, age 76, right hemisphere 13.7
2785 Male, age 18, unknown 12.8
Substantia nigra
nTPM: 12.2
2409 Female, age 72, unknown 15.9
2590 Female, age 75, unknown 15.6
2665 Male, age 74, both hemispheres 14.7
1851 Male, age 51, unknown 11.9
1941 Male, age 53, unknown 11.5
1916 Female, age 42, unknown 10.9
1889 Female, age 72, unknown 10.8
2699 Male, age 18, unknown 10.8
2241 Male, age 72, unknown 10.7
2583 Male, age 75, right hemisphere 9.3
Superior colliculus
nTPM: 10.7
2261 Male, age 18, unknown 14.3
2587 Male, age 74, left hemisphere 12.6
1796 Male, age 53, unknown 10.8
2668 Female, age 75, unknown 10.7
1895 Male, age 76, right hemisphere 10.5
2087 Female, age 72, unknown 10.4
1913 Female, age 42, unknown 10.2
1995 Male, age 72, unknown 10.1
1839 Male, age 51, unknown 9.2
2664 Male, age 75, both hemispheres 8.3
Ventral tegmental area
nTPM: 11.8
1942 Male, age 51, unknown 14.3
1915 Female, age 42, unknown 13.4
2410 Female, age 72, unknown 13.2
2223 Female, age 72, unknown 13.1
2021 Male, age 53, unknown 9.5
2218 Male, age 76, both hemispheres 7.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.0
Samples: 183

Max nTPM: 99.3
Min nTPM: 9.6
Std nTPM: 11.4
Median nTPM: 23.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 99.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 67.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 65.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 60.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 58.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 52.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 48.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 47.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 47.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 45.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.6
Samples: 4

Max nTPM: 18.8
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 16.8
Sample C Male 18.3
Sample D Male 18.8
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 22.8
Min nTPM: 16.1
Sample A Female 22.8
Sample B Female 16.1
Sample C Male 17.1
Sample D Male 17.7
Periaqueductal gray
nTPM: 16.0
Samples: 3

Max nTPM: 17.0
Min nTPM: 14.9
Sample B Female 17.0
Sample C Male 16.1
Sample D Male 14.9
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 18.6
Min nTPM: 16.5
Sample A Female 18.6
Sample B Female 16.5
Sample C Male 17.8
Sample D Male 18.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 32.0
Min nTPM: 29.9
Sample A Male 29.9
Sample B Male 30.9
Sample C Female 32.0
Sample D Female 29.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
74822880 Antisense, RP_051130_02_E10, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo