A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.8
nTPM
Monaco:
13.8
nTPM
Schmiedel:
24.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.8
HPA sample
nTPM
Memory B-cell nTPM: 2.8
Samples: 6
Max nTPM: 4.2
Min nTPM: 1.9
P10809_1017
3.1
P10809_1025
4.2
P10809_1044
3.0
P10809_1063
2.0
P10809_1092
2.8
P10809_1105
1.9
Naive B-cell nTPM: 1.2
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.0
P10809_1011
1.9
P10809_1029
0.9
P10809_1048
0.0
P10809_1067
1.8
P10809_1091
1.6
P10809_1104
0.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 13.9
Samples: 4
Max nTPM: 23.5
Min nTPM: 8.7
RHH5310_R3677
9.3
RHH5218_R3590
23.5
RHH5247_R3619
8.7
RHH5276_R3648
14.0
Naive B-cell nTPM: 12.8
Samples: 4
Max nTPM: 15.1
Min nTPM: 11.0
RHH5308_R3675
11.0
RHH5216_R3588
15.1
RHH5245_R3617
12.0
RHH5274_R3646
13.1
Non-switched memory B-cell nTPM: 11.6
Samples: 4
Max nTPM: 14.0
Min nTPM: 6.8
RHH5309_R3676
14.0
RHH5217_R3589
6.8
RHH5246_R3618
12.0
RHH5275_R3647
13.7
Plasmablast nTPM: 12.8
Samples: 4
Max nTPM: 20.9
Min nTPM: 7.1
RHH5312_R3679
13.0
RHH5220_R3592
10.3
RHH5249_R3621
7.1
RHH5278_R3650
20.9
Switched memory B-cell nTPM: 12.5
Samples: 4
Max nTPM: 16.4
Min nTPM: 8.7
RHH5311_R3678
8.7
RHH5219_R3591
10.4
RHH5248_R3620
16.4
RHH5277_R3649
14.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.5
Schmiedel sample id
TPM
Naive B-cell TPM: 24.5
Samples: 91
Max TPM: 48.4
Min TPM: 9.2
B_CELL_NAIVE_1
48.4
B_CELL_NAIVE_2
47.8
B_CELL_NAIVE_3
45.5
B_CELL_NAIVE_4
44.5
B_CELL_NAIVE_5
43.8
B_CELL_NAIVE_6
43.0
B_CELL_NAIVE_7
43.0
B_CELL_NAIVE_8
41.4
B_CELL_NAIVE_9
40.0
B_CELL_NAIVE_10
36.2
B_CELL_NAIVE_11
35.2
B_CELL_NAIVE_12
34.4
B_CELL_NAIVE_13
34.3
B_CELL_NAIVE_14
33.9
B_CELL_NAIVE_15
33.8
B_CELL_NAIVE_16
33.8
B_CELL_NAIVE_17
33.0
B_CELL_NAIVE_18
32.0
B_CELL_NAIVE_19
31.7
B_CELL_NAIVE_20
30.4
B_CELL_NAIVE_21
30.2
B_CELL_NAIVE_22
30.1
B_CELL_NAIVE_23
30.0
B_CELL_NAIVE_24
29.6
B_CELL_NAIVE_25
29.2
B_CELL_NAIVE_26
29.1
B_CELL_NAIVE_27
28.7
B_CELL_NAIVE_28
28.6
B_CELL_NAIVE_29
28.3
B_CELL_NAIVE_30
27.9
B_CELL_NAIVE_31
27.9
B_CELL_NAIVE_32
27.7
B_CELL_NAIVE_33
26.8
B_CELL_NAIVE_34
26.6
B_CELL_NAIVE_35
26.2
B_CELL_NAIVE_36
25.8
B_CELL_NAIVE_37
24.9
B_CELL_NAIVE_38
24.2
B_CELL_NAIVE_39
23.7
B_CELL_NAIVE_40
23.4
B_CELL_NAIVE_41
23.3
B_CELL_NAIVE_42
22.9
B_CELL_NAIVE_43
22.7
B_CELL_NAIVE_44
22.7
B_CELL_NAIVE_45
22.1
B_CELL_NAIVE_46
22.1
B_CELL_NAIVE_47
21.8
B_CELL_NAIVE_48
21.7
B_CELL_NAIVE_49
21.7
B_CELL_NAIVE_50
21.4
B_CELL_NAIVE_51
21.4
B_CELL_NAIVE_52
21.0
B_CELL_NAIVE_53
20.9
B_CELL_NAIVE_54
20.3
B_CELL_NAIVE_55
20.2
B_CELL_NAIVE_56
20.0
B_CELL_NAIVE_57
19.6
B_CELL_NAIVE_58
19.4
B_CELL_NAIVE_59
19.1
B_CELL_NAIVE_60
19.0
B_CELL_NAIVE_61
18.9
B_CELL_NAIVE_62
18.7
B_CELL_NAIVE_63
18.5
B_CELL_NAIVE_64
18.4
B_CELL_NAIVE_65
18.2
B_CELL_NAIVE_66
18.1
B_CELL_NAIVE_67
17.9
B_CELL_NAIVE_68
17.9
B_CELL_NAIVE_69
17.9
B_CELL_NAIVE_70
17.8
B_CELL_NAIVE_71
17.5
B_CELL_NAIVE_72
17.4
B_CELL_NAIVE_73
17.3
B_CELL_NAIVE_74
17.0
B_CELL_NAIVE_75
16.4
B_CELL_NAIVE_76
16.3
B_CELL_NAIVE_77
16.1
B_CELL_NAIVE_78
15.2
B_CELL_NAIVE_79
14.9
B_CELL_NAIVE_80
14.7
B_CELL_NAIVE_81
14.4
B_CELL_NAIVE_82
14.0
B_CELL_NAIVE_83
14.0
B_CELL_NAIVE_84
13.7
B_CELL_NAIVE_85
13.7
B_CELL_NAIVE_86
13.4
B_CELL_NAIVE_87
13.3
B_CELL_NAIVE_88
13.2
B_CELL_NAIVE_89
13.1
B_CELL_NAIVE_90
10.4
B_CELL_NAIVE_91
9.2
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