A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
526.5
nTPM
Monaco:
338.5
nTPM
Schmiedel:
161.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
526.5
HPA sample
nTPM
Classical monocyte nTPM: 526.5
Samples: 6
Max nTPM: 622.8
Min nTPM: 384.2
P10809_1003
622.8
P10809_1020
580.1
P10809_1039
617.3
P10809_1058
384.2
P10809_1080
439.8
P10809_1107
515.0
Intermediate monocyte nTPM: 131.3
Samples: 6
Max nTPM: 147.9
Min nTPM: 69.4
P10809_1004
69.4
P10809_1023
146.9
P10809_1042
144.0
P10809_1061
141.4
P10809_1081
147.9
P10809_1108
138.3
Non-classical monocyte nTPM: 32.5
Samples: 5
Max nTPM: 52.2
Min nTPM: 21.0
P10809_1005
29.6
P10809_1053
31.8
P10809_1072
52.2
P10809_1082
27.8
P10809_1109
21.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
338.5
Monaco sample
nTPM
Classical monocyte nTPM: 338.5
Samples: 4
Max nTPM: 464.9
Min nTPM: 233.7
RHH5313_R3680
236.9
RHH5221_R3593
233.7
RHH5250_R3622
418.3
RHH5279_R3651
464.9
Intermediate monocyte nTPM: 74.2
Samples: 4
Max nTPM: 100.9
Min nTPM: 49.7
RHH5314_R3681
87.8
RHH5222_R3594
49.7
RHH5251_R3623
58.2
RHH5280_R3652
100.9
Non-classical monocyte nTPM: 17.5
Samples: 4
Max nTPM: 22.9
Min nTPM: 7.6
RHH5315_R3682
20.3
RHH5223_R3595
7.6
RHH5252_R3624
19.4
RHH5281_R3653
22.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
161.2
Schmiedel sample id
TPM
Classical monocyte TPM: 161.2
Samples: 91
Max TPM: 238.6
Min TPM: 87.7
MONOCYTES_1
238.6
MONOCYTES_2
224.5
MONOCYTES_3
222.1
MONOCYTES_4
213.7
MONOCYTES_5
211.2
MONOCYTES_6
210.9
MONOCYTES_7
210.5
MONOCYTES_8
210.4
MONOCYTES_9
203.4
MONOCYTES_10
199.2
MONOCYTES_11
198.9
MONOCYTES_12
198.0
MONOCYTES_13
195.9
MONOCYTES_14
193.5
MONOCYTES_15
189.7
MONOCYTES_16
186.4
MONOCYTES_17
184.0
MONOCYTES_18
183.9
MONOCYTES_19
182.4
MONOCYTES_20
181.6
MONOCYTES_21
180.1
MONOCYTES_22
179.4
MONOCYTES_23
178.7
MONOCYTES_24
176.4
MONOCYTES_25
176.2
MONOCYTES_26
174.6
MONOCYTES_27
174.4
MONOCYTES_28
173.0
MONOCYTES_29
172.7
MONOCYTES_30
170.7
MONOCYTES_31
168.9
MONOCYTES_32
168.6
MONOCYTES_33
166.9
MONOCYTES_34
166.7
MONOCYTES_35
165.8
MONOCYTES_36
165.4
MONOCYTES_37
164.6
MONOCYTES_38
164.5
MONOCYTES_39
163.1
MONOCYTES_40
163.0
MONOCYTES_41
162.4
MONOCYTES_42
162.0
MONOCYTES_43
161.0
MONOCYTES_44
160.1
MONOCYTES_45
160.0
MONOCYTES_46
159.7
MONOCYTES_47
158.6
MONOCYTES_48
158.4
MONOCYTES_49
156.5
MONOCYTES_50
156.5
MONOCYTES_51
156.0
MONOCYTES_52
155.7
MONOCYTES_53
155.2
MONOCYTES_54
154.1
MONOCYTES_55
154.0
MONOCYTES_56
151.1
MONOCYTES_57
151.0
MONOCYTES_58
150.6
MONOCYTES_59
150.4
MONOCYTES_60
149.4
MONOCYTES_61
148.8
MONOCYTES_62
148.0
MONOCYTES_63
147.9
MONOCYTES_64
147.2
MONOCYTES_65
143.4
MONOCYTES_66
143.1
MONOCYTES_67
142.8
MONOCYTES_68
142.7
MONOCYTES_69
142.7
MONOCYTES_70
141.5
MONOCYTES_71
141.0
MONOCYTES_72
140.1
MONOCYTES_73
139.7
MONOCYTES_74
139.2
MONOCYTES_75
138.4
MONOCYTES_76
137.6
MONOCYTES_77
136.8
MONOCYTES_78
135.0
MONOCYTES_79
133.3
MONOCYTES_80
131.9
MONOCYTES_81
130.2
MONOCYTES_82
129.1
MONOCYTES_83
128.4
MONOCYTES_84
125.2
MONOCYTES_85
121.4
MONOCYTES_86
118.2
MONOCYTES_87
114.4
MONOCYTES_88
112.0
MONOCYTES_89
110.0
MONOCYTES_90
100.4
MONOCYTES_91
87.7
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Non-classical monocyte TPM: 6.4
Samples: 90
Max TPM: 19.6
Min TPM: 2.1
M2_1
19.6
M2_2
13.5
M2_3
13.0
M2_4
11.2
M2_5
11.1
M2_6
10.8
M2_7
10.3
M2_8
10.0
M2_9
9.9
M2_10
9.7
M2_11
9.7
M2_12
9.3
M2_13
8.8
M2_14
8.8
M2_15
8.5
M2_16
8.3
M2_17
8.2
M2_18
8.1
M2_19
8.0
M2_20
7.7
M2_21
7.7
M2_22
7.6
M2_23
7.5
M2_24
7.4
M2_25
7.2
M2_26
7.1
M2_27
7.1
M2_28
7.0
M2_29
7.0
M2_30
6.8
M2_31
6.8
M2_32
6.8
M2_33
6.7
M2_34
6.7
M2_35
6.6
M2_36
6.6
M2_37
6.5
M2_38
6.5
M2_39
6.4
M2_40
6.4
M2_41
6.4
M2_42
6.3
M2_43
6.3
M2_44
6.2
M2_45
6.1
M2_46
6.1
M2_47
6.0
M2_48
5.9
M2_49
5.9
M2_50
5.8
M2_51
5.7
M2_52
5.7
M2_53
5.6
M2_54
5.5
M2_55
5.3
M2_56
5.1
M2_57
5.1
M2_58
5.1
M2_59
5.0
M2_60
5.0
M2_61
5.0
M2_62
5.0
M2_63
4.9
M2_64
4.9
M2_65
4.8
M2_66
4.8
M2_67
4.8
M2_68
4.7
M2_69
4.6
M2_70
4.6
M2_71
4.6
M2_72
4.1
M2_73
4.0
M2_74
4.0
M2_75
4.0
M2_76
3.9
M2_77
3.7
M2_78
3.6
M2_79
3.5
M2_80
3.3
M2_81
3.3
M2_82
3.2
M2_83
3.1
M2_84
3.0
M2_85
2.9
M2_86
2.9
M2_87
2.8
M2_88
2.7
M2_89
2.2
M2_90
2.1
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