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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:135.3 nTPM
FANTOM5:141.4 Scaled Tags Per Million
Pig:30.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA035304Antibody CAB000020
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 135.3
Samples: 300

Max nTPM: 483.4
Min nTPM: 21.8
Std nTPM: 70.6
Median nTPM: 120.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 483.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 445.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 402.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 357.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 346.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 340.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 339.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 337.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 319.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 311.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 310.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 297.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 292.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 282.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 280.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 266.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 262.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 256.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 256.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 247.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 246.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 238.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 236.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 236.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 233.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 231.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 231.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 231.0
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 229.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 228.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 225.1
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 223.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 220.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 217.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 214.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 214.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 206.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 203.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 202.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 200.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 197.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 196.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 196.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 196.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 196.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 195.0
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 190.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 190.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 190.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 189.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 189.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 187.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 187.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 186.6
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 186.2
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 184.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 181.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 181.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 181.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 180.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 180.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 179.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 179.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 178.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 178.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 177.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 176.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 175.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 175.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 174.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 173.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 173.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 172.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 171.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 170.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 170.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 167.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 166.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 166.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 165.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 164.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 162.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 160.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 160.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 160.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 159.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 159.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 159.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 158.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 158.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 158.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 156.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 153.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 148.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 147.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 147.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 147.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 147.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 145.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 145.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 144.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 144.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 143.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 142.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 142.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 140.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 140.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 140.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 140.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 139.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 139.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 138.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 138.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 138.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 138.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 137.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 137.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 136.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 135.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 134.0
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 133.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 133.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 133.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 133.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 132.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 132.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 132.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 132.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 132.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 131.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 130.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 130.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 129.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 128.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 127.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 127.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 127.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 126.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 126.6
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 126.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 126.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 124.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 123.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 123.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 123.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 122.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 121.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 121.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 121.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 120.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 119.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 119.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 118.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 117.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 116.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 116.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 115.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 115.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 115.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 114.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 114.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 114.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 113.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 112.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 112.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 112.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 112.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 111.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 110.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 110.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 110.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 110.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 110.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 109.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 109.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 108.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 108.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 108.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 108.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 108.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 108.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 108.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 107.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 106.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 106.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 105.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 105.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 105.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 104.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 104.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 102.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 102.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 101.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 100.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 100.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 100.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 100.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 99.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 98.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 98.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 98.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 98.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 98.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 96.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 95.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 95.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 95.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 94.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 94.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 94.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 94.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 93.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 93.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 92.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 92.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 91.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 91.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 91.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 91.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 90.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 90.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 90.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 89.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 89.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 89.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 88.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 87.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 87.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 86.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 86.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 86.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 85.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 84.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 84.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 84.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 83.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 82.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 82.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 81.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 81.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 81.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 79.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 79.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 78.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 78.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 78.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 77.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 77.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 75.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 74.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 74.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 74.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 73.9
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 73.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 73.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 73.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 73.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 73.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 73.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 73.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 73.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 69.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 69.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 68.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 68.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 67.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 66.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 66.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 64.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 63.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 63.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 63.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 62.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 61.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 61.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 60.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 60.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 60.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 60.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 58.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 55.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 54.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 49.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 48.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 47.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 47.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 46.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 46.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 46.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 45.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 45.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 44.3
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 43.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 38.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 37.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 36.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 35.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 29.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 26.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 21.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

141.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 141.4
FF:10164-103B2 76 years, female 141.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.6
Pig sample Sample description nTPM
Caudate
nTPM: 30.6
Samples: 4

Max nTPM: 34.1
Min nTPM: 26.0
Sample A Female 30.3
Sample B Female 31.8
Sample C Male 34.1
Sample D Male 26.0

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