We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CD99
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CD99
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:286.8 nTPM
HPA Brain:331.2 nTPM
GTEx:286.8 nTPM
FANTOM5:872.6 Scaled Tags Per Million
Pig:165.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

331.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 331.2
1981 Female, age 72, midline 525.6
2048 Male, age 55, midline 423.5
2816 Male, age 47, midline 255.4
2565 Male, age 75, midline 233.9
2194 Female, age 79, both hemispheres 217.4
Cervical spinal cord, dorsal horn
nTPM: 274.6
2173 Female, age 72, unknown 476.8
2721 Male, age 90, both hemispheres 306.8
2296 Male, age 66, both hemispheres 271.2
1877 Male, age 55, unknown 250.0
2069 Male, age 47, both hemispheres 249.2
2297 Male, age 75, both hemispheres 94.0
Cervical spinal cord, ventral horn
nTPM: 276.5
2098 Female, age 72, unknown 741.7
2809 Male, age 90, both hemispheres 320.8
2295 Male, age 66, both hemispheres 218.5
2068 Male, age 55, unknown 156.9
2820 Female, age 79, both hemispheres 111.0
2480 Male, age 75, both hemispheres 110.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 286.8
Samples: 204

Max nTPM: 1036.9
Min nTPM: 31.8
Std nTPM: 151.4
Median nTPM: 256.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1036.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 847.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 696.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 665.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 662.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 630.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 627.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 626.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 600.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 589.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 574.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 572.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 561.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 552.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 520.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 518.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 515.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 513.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 504.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 501.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 499.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 487.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 485.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 481.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 479.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 470.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 465.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 459.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 453.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 453.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 443.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 436.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 430.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 429.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 425.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 420.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 415.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 410.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 407.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 402.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 397.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 392.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 391.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 388.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 387.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 378.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 368.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 360.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 358.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 355.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 354.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 354.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 352.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 349.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 347.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 342.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 337.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 331.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 330.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 329.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 328.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 326.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 325.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 324.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 322.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 313.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 311.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 307.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 306.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 304.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 303.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 299.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 299.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 295.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 293.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 293.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 292.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 291.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 290.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 289.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 287.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 285.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 281.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 279.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 278.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 278.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 272.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 271.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 271.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 270.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 270.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 269.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 269.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 268.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 266.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 265.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 261.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 260.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 260.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 258.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 257.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 257.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 255.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 252.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 252.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 251.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 250.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 248.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 246.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 245.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 242.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 240.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 239.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 238.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 235.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 231.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 230.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 230.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 230.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 229.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 228.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 227.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 224.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 224.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 224.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 224.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 223.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 220.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 219.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 219.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 215.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 214.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 214.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 213.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 213.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 210.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 210.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 209.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 206.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 204.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 203.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 202.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 199.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 197.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 193.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 189.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 189.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 189.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 186.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 185.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 184.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 183.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 182.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 181.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 178.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 177.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 176.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 171.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 170.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 169.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 168.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 168.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 168.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 167.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 165.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 162.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 158.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 156.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 156.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 155.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 154.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 151.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 151.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 150.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 149.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 147.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 146.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 141.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 140.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 138.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 132.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 130.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 130.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 130.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 129.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 123.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 117.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 115.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 113.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 113.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 110.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 105.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 103.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 98.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 96.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 93.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 90.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 86.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 81.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 78.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 74.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 73.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 31.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

872.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 872.6
FF:10181-103D1 60 years, female 908.8
FF:10159-103A6 76 years, female 836.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

165.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 153.3
Samples: 4

Max nTPM: 230.7
Min nTPM: 89.3
Sample A Female 89.3
Sample B Female 153.0
Sample C Male 230.7
Sample D Male 140.3
Ventral spinal cord
nTPM: 165.4
Samples: 4

Max nTPM: 204.6
Min nTPM: 132.5
Sample A Female 132.5
Sample B Female 176.1
Sample C Male 204.6
Sample D Male 148.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo